Factsheet for PGSC0003DMT400036565

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009175
PGSC0003DMT400009287
PGSC0003DMT400049165
PGSC0003DMT400076178
PGSC0003DMT400076179

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08640.1	PGSC0003DMT400009175	AT3G51240.1	18467451
AT5G08640.1	PGSC0003DMT400049165	AT5G13930.1	18467451
AT5G08640.1	PGSC0003DMT400076178	AT5G13930.1	18467451
AT5G08640.1	PGSC0003DMT400076179	AT5G13930.1	18467451
AT5G08640.1	PGSC0003DMT400009287	AT5G42800.1	18467451
AT5G63590.1	PGSC0003DMT400049165	AT5G13930.1	18467451
AT5G63590.1	PGSC0003DMT400076178	AT5G13930.1	18467451
AT5G63590.1	PGSC0003DMT400076179	AT5G13930.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013110.1.1	Tomato	cytosol, plastid	94.89	94.89
VIT_18s0001g03470.t01	Wine grape	cytosol	63.64	69.57
KRH18787	Soybean	cytosol	65.34	68.86
KRH53203	Soybean	cytosol	64.2	67.87
VIT_18s0001g03490.t01	Wine grape	cytosol	64.49	67.76
KRH16579	Soybean	cytosol, mitochondrion	56.82	66.23
AT5G08640.1	Thale cress	cytosol	59.94	62.8
CDY21556	Canola	cytoskeleton, cytosol, peroxisome	59.94	62.8
GSMUA_Achr3P07030_001	Banana	cytosol	59.38	62.76
Bra009358.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	59.66	62.5
CDX69931	Canola	cytoskeleton, cytosol, peroxisome	59.66	62.5
GSMUA_Achr10P...	Banana	cytosol	58.81	61.79
GSMUA_Achr8P23330_001	Banana	cytosol	57.67	60.96
GSMUA_Achr10P...	Banana	cytosol	53.69	60.38
Os02t0767300-01	Rice	cytosol	51.7	54.98
AT5G63590.1	Thale cress	cytoskeleton, cytosol, peroxisome	47.73	54.55
TraesCS6D01G310700.1	Wheat	plastid	51.7	54.49
HORVU6Hr1G056710.2	Barley	cytosol, peroxisome	11.08	54.17
TraesCS6B01G362100.1	Wheat	cytosol	50.85	53.59
Bra038648.1-P	Field mustard	cytosol	44.89	53.2
CDY41522	Canola	cytosol	44.89	53.2
TraesCS6A01G331400.1	Wheat	plastid	50.28	52.99
EES07584	Sorghum	cytosol	49.72	52.71
CDY39565	Canola	cytosol	45.45	52.46
Zm00001d018184_P001	Maize	endoplasmic reticulum	46.88	52.38
Bra018076.1-P	Field mustard	cytosol	45.17	52.13
CDY48154	Canola	cytosol	45.17	52.13
Zm00001d018181_P001	Maize	endoplasmic reticulum, nucleus	46.59	52.06
AT5G63580.1	Thale cress	cytoskeleton, cytosol, peroxisome	35.51	50.0
CDY69013	Canola	cytosol	43.47	49.84
TraesCS4D01G339800.1	Wheat	cytosol, plastid	47.16	49.4
TraesCS4B01G344800.1	Wheat	cytosol	45.45	49.38
Bra038647.1-P	Field mustard	cytosol	42.9	49.19
TraesCS4B01G344900.1	Wheat	cytosol, plastid	42.9	48.87
TraesCS5A01G513700.1	Wheat	cytosol, plastid	46.59	48.81
Bra037747.1-P	Field mustard	cytosol	43.47	48.73
AT5G43935.1	Thale cress	cytosol	40.34	48.46
CDY39860	Canola	cytosol	42.05	47.9
CDX81188	Canola	cytosol	42.9	47.19
CDY31361	Canola	cytosol	41.19	46.77
AT5G63600.2	Thale cress	cytosol	43.18	46.63
CDX97750	Canola	cytosol	29.26	46.61
AT5G63595.1	Thale cress	cytoskeleton, cytosol, peroxisome	36.93	46.59
CDY41520	Canola	cytosol	32.67	46.56
Bra029211.1-P	Field mustard	cytosol	40.91	46.45
EES00073	Sorghum	cytosol	39.77	45.45
CDY41521	Canola	cytosol, mitochondrion	2.56	42.86
HORVU6Hr1G080360.1	Barley	plastid	40.34	40.57
PGSC0003DMT400051681	Potato	cytosol	34.66	36.2
PGSC0003DMT400013924	Potato	cytosol	11.93	35.59
PGSC0003DMT400069218	Potato	cytosol	34.38	35.38
PGSC0003DMT400001570	Potato	cytosol	33.81	35.31
CDY31363	Canola	cytosol	41.48	34.6
VIT_18s0001g03510.t01	Wine grape	cytosol	66.76	34.56
Bra029212.1-P	Field mustard	cytosol	41.19	34.36
PGSC0003DMT400054579	Potato	cytosol	32.95	34.02
PGSC0003DMT400031149	Potato	cytosol	34.38	33.99
PGSC0003DMT400013913	Potato	cytoskeleton, cytosol, peroxisome	25.28	33.97
PGSC0003DMT400013920	Potato	cytoskeleton, cytosol, peroxisome	25.28	33.71
PGSC0003DMT400049193	Potato	cytosol, mitochondrion, peroxisome	17.33	33.33
PGSC0003DMT400025150	Potato	cytosol	30.68	32.83
PGSC0003DMT400030676	Potato	mitochondrion	31.53	32.55
PGSC0003DMT400049192	Potato	cytosol	33.24	31.97
PGSC0003DMT400028828	Potato	cytosol	32.67	31.94
PGSC0003DMT400067044	Potato	cytosol	29.83	31.25
PGSC0003DMT400083733	Potato	cytosol	31.25	30.56
PGSC0003DMT400067586	Potato	cytosol, peroxisome, plastid	30.4	30.31
PGSC0003DMT400058554	Potato	cytosol	38.92	30.11
PGSC0003DMT400025139	Potato	cytosol	28.41	29.94
PGSC0003DMT400025148	Potato	cytosol	23.58	29.86
PGSC0003DMT400009900	Potato	cytosol	32.39	29.84
PGSC0003DMT400092726	Potato	cytosol, peroxisome, plastid	29.55	29.63
PGSC0003DMT400070302	Potato	cytosol	30.68	29.27
PGSC0003DMT400070444	Potato	cytosol, peroxisome, plastid	28.69	28.69
PGSC0003DMT400041798	Potato	cytosol	26.99	28.27
PGSC0003DMT400009175	Potato	cytosol	28.69	28.06
PGSC0003DMT400088016	Potato	cytosol	24.72	26.69
PGSC0003DMT400029386	Potato	cytosol, nucleus, peroxisome	27.56	25.87
PGSC0003DMT400083728	Potato	cytosol	10.51	22.16

Protein Annotations

EntrezGene:102577717	Gene3D:2.60.120.330	MapMan:9.2.2.5.1	ProteinID:ACN81826	ProteinID:ACN81826.1	UniProt:C0LUV3
ProteinID:CAA63092	ProteinID:CAA63092.1	InterPro:DIOX_N	EMBL:FJ770475	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009813	GO:GO:0016491	GO:GO:0030246	GO:GO:0031418
GO:GO:0045431	GO:GO:0045486	GO:GO:0046872	GO:GO:0051213	GO:GO:0051555	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	RefSeq:NP_001274926.1	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400014093	PGSC:PGSC0003DMG400014093	EnsemblPlants:PGSC0003DMT400036565	PRINTS:PR00682	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF165	SUPFAM:SSF51197	UniParc:UPI0001981BC0	EMBL:X92178	RefSeq:XP_015166151.1
RefSeq:XP_015166152.1	SEG:seg	:	:	:	:

Description

Flavonol synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400014093]

Coordinates

chr11:-:10503844..10509592

Molecular Weight (calculated)

40043.0 Da

IEP (calculated)

5.667

GRAVY (calculated)

-0.432

Length

352 amino acids

Sequence
(BLAST)

001: MKTIQGQSAT TALTMEVARV QAISSITKCM DTIPSEYIRS ENEQPAATTL QGVVLEVPVI DISNVDDDEE KLVKEIVEAS KEWGIFQVIN HGIPDEVIEN
101: LQKVGKEFFE EVPQEEKELI AKKPGAQSLE GYGTSLQKEI EGKKGWVDHL FHKIWPPSAI NYRYWPKNPP SYREANEEYA KWLRKVADGI FRSLSLGLGL
201: EGHEMMEAAG SEDIVYMLKI NYYPPCPRPD LALGVVAHTD MSYITLLVPN EVQGLQVFKD GHWYDVNYIP NAIIVHIGDQ VEILSNGKYK SVYHRTTVNK
301: YKTRMSWPVF LEPSSEHEVG PIPKLINEAN PPKFKTKKYK DYVYCKLNKL PQ

Best Arabidopsis Sequence Match ( AT5G08640.1 )
(BLAST)

001: MEVERVQDIS SSSLLTEAIP LEFIRSEKEQ PAITTFRGPT PAIPVVDLSD PDEESVRRAV VKASEEWGLF QVVNHGIPTE LIRRLQDVGR KFFELPSSEK
101: ESVAKPEDSK DIEGYGTKLQ KDPEGKKAWV DHLFHRIWPP SCVNYRFWPK NPPEYREVNE EYAVHVKKLS ETLLGILSDG LGLKRDALKE GLGGEMAEYM
201: MKINYYPPCP RPDLALGVPA HTDLSGITLL VPNEVPGLQV FKDDHWFDAE YIPSAVIVHI GDQILRLSNG RYKNVLHRTT VDKEKTRMSW PVFLEPPREK
301: IVGPLPELTG DDNPPKFKPF AFKDYSYRKL NKLPLD

Arabidopsis Description

FLS1Flavonol synthase/flavanone 3-hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q96330]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.