Factsheet for PGSC0003DMT400088016

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090140.1.1	Tomato	plastid	60.12	87.5
PGSC0003DMT400067044	Potato	cytosol	71.47	69.35
PGSC0003DMT400092726	Potato	cytosol, peroxisome, plastid	71.47	66.38
CDY30486	Canola	cytosol, nucleus, peroxisome	51.53	47.19
AT2G44800.1	Thale cress	cytosol, nucleus, peroxisome, plastid	51.53	47.06
Bra014500.1-P	Field mustard	cytosol	50.92	46.5
AT3G60290.1	Thale cress	cytosol, nucleus, peroxisome	50.61	46.22
CDY23457	Canola	cytosol, nucleus, peroxisome	50.31	46.07
Bra004867.1-P	Field mustard	cytosol	50.61	45.96
CDX74687	Canola	cytosol	50.61	45.96
CDY56988	Canola	peroxisome	50.31	45.94
CDY42687	Canola	peroxisome	50.31	45.81
KRH40180	Soybean	plastid	48.47	44.89
PGSC0003DMT400013924	Potato	cytosol	12.27	33.9
PGSC0003DMT400013913	Potato	cytoskeleton, cytosol, peroxisome	26.38	32.82
PGSC0003DMT400013920	Potato	cytoskeleton, cytosol, peroxisome	26.07	32.2
PGSC0003DMT400070302	Potato	cytosol	35.89	31.71
PGSC0003DMT400049193	Potato	cytosol, mitochondrion, peroxisome	17.48	31.15
PGSC0003DMT400009900	Potato	cytosol	35.89	30.63
PGSC0003DMT400067586	Potato	cytosol, peroxisome, plastid	31.29	28.9
PGSC0003DMT400083733	Potato	cytosol	31.9	28.89
PGSC0003DMT400001570	Potato	cytosol	29.75	28.78
PGSC0003DMT400069218	Potato	cytosol	28.83	27.49
PGSC0003DMT400049192	Potato	cytosol	30.37	27.05
PGSC0003DMT400028828	Potato	cytosol	29.45	26.67
PGSC0003DMT400025150	Potato	cytosol	26.38	26.14
PGSC0003DMT400041798	Potato	cytosol	26.69	25.89
PGSC0003DMT400051681	Potato	cytosol	26.69	25.82
PGSC0003DMT400054579	Potato	cytosol	26.38	25.22
PGSC0003DMT400036565	Potato	cytosol	26.69	24.72
PGSC0003DMT400030676	Potato	mitochondrion	25.77	24.63
PGSC0003DMT400031149	Potato	cytosol	26.69	24.44
PGSC0003DMT400025139	Potato	cytosol	24.85	24.25
PGSC0003DMT400025148	Potato	cytosol	20.55	24.1
PGSC0003DMT400070444	Potato	cytosol, peroxisome, plastid	25.46	23.58
PGSC0003DMT400009175	Potato	cytosol	25.46	23.06
PGSC0003DMT400083728	Potato	cytosol	11.04	21.56
PGSC0003DMT400058554	Potato	cytosol	26.38	18.9
PGSC0003DMT400029386	Potato	cytosol, nucleus, peroxisome	21.47	18.67

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1DF26
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400037587	PGSC:PGSC0003DMG400037587	EnsemblPlants:PGSC0003DMT400088016
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF224	SUPFAM:SSF51197	TMHMM:TMhelix	UniParc:UPI0002967E0E

Description

SRG1 [Source:PGSC_GENE;Acc:PGSC0003DMG400037587]

Coordinates

chr1:+:69143165..69147315

Molecular Weight (calculated)

35691.9 Da

IEP (calculated)

4.829

GRAVY (calculated)

0.023

Length

326 amino acids

Sequence
(BLAST)

001: MDKSSATPND SFTSAMTLTE EGLTCIPKRY IVPSSLRPNG TLSNSNTCLP IVDLSLLQHP LLRPQIIQQV YLACKELGFF QVVNHGIPLS VMKDALDNAI
101: EFFDLPSEEK LHLLSSNVHD PVREKMGNYT KAVQKLQEEI MEVIFESLEL NPDYLHEDIA KGSQVIAVNC YPACPEPDLA LGLPPHTDYS LLSIILQNHQ
201: GLQIMDRDEK WHSVPVIEGG LIALVGDHME VLSNGQYTGV VHRAAVNSEK KRLSIASLHS LALGKKVRPA PALVDEQHIL SYNEGGFSDF LDFISGEDIV
301: QVAFGGGVGI ISCAAGLLYA FFTSTP

Best Arabidopsis Sequence Match ( AT2G44800.1 )
(BLAST)

001: MEETKMSLLD DSFTSAMTLT NSGVPQVPDR YVLPPSQRPA LGSSLGTSET TLPVIDLSLL HQPFLRSLAI HEISMACKEF GFFQVINHGI PSSVVNDALD
101: AATQFFDLPV EEKMLLVSAN VHEPVRYGTS LNHSTDRVHY WRDFIKHYSH PLSKWIDMWP SNPPCYKDKV GKYAEATHLL HKQLIEAISE SLGLEKNYLQ
201: EEIEEGSQVM AVNCYPACPE PEMALGMPPH SDFSSLTILL QSSKGLQIMD CNKNWVCVPY IEGALIVQLG DQVEVMSNGI YKSVIHRVTV NKEVKRLSFA
301: SLHSLPLHKK ISPAPKLVNP NNAPAYGEFS FNDFLNYISS NDFIQERFID TIKKSSS

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IV21]
SUBAcon: [peroxisome,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.