Factsheet for PGSC0003DMT400067586

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 4
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006770.2.1	Tomato	plastid	92.35	92.88
PGSC0003DMT400083733	Potato	cytosol	71.1	69.72
VIT_03s0017g00620.t01	Wine grape	cytosol	55.52	55.68
VIT_03s0017g00710.t01	Wine grape	plastid	52.12	53.03
PGSC0003DMT400013924	Potato	cytosol	15.01	44.92
PGSC0003DMT400083728	Potato	cytosol	21.25	44.91
PGSC0003DMT400013920	Potato	cytoskeleton, cytosol, peroxisome	31.44	42.05
PGSC0003DMT400013913	Potato	cytoskeleton, cytosol, peroxisome	31.16	41.98
PGSC0003DMT400067044	Potato	cytosol	34.84	36.61
PGSC0003DMT400049193	Potato	cytosol, mitochondrion, peroxisome	18.41	35.52
VIT_03s0017g00830.t01	Wine grape	plastid	53.82	35.06
PGSC0003DMT400001570	Potato	cytosol	33.43	35.01
PGSC0003DMT400070302	Potato	cytosol	36.26	34.69
PGSC0003DMT400069218	Potato	cytosol	33.14	34.21
PGSC0003DMT400054579	Potato	cytosol	32.29	33.43
PGSC0003DMT400092726	Potato	cytosol, peroxisome, plastid	33.14	33.33
PGSC0003DMT400051681	Potato	cytosol	31.16	32.64
PGSC0003DMT400049192	Potato	cytosol	33.71	32.51
PGSC0003DMT400009900	Potato	cytosol	34.84	32.2
PGSC0003DMT400088016	Potato	cytosol	28.9	31.29
PGSC0003DMT400025150	Potato	cytosol	28.9	31.0
PGSC0003DMT400028828	Potato	cytosol	31.16	30.56
PGSC0003DMT400036565	Potato	cytosol	30.31	30.4
PGSC0003DMT400030676	Potato	mitochondrion	28.9	29.91
PGSC0003DMT400031149	Potato	cytosol	29.75	29.49
PGSC0003DMT400025148	Potato	cytosol	22.95	29.14
PGSC0003DMT400041798	Potato	cytosol	27.48	28.87
PGSC0003DMT400025139	Potato	cytosol	26.63	28.14
PGSC0003DMT400070444	Potato	cytosol, peroxisome, plastid	27.2	27.27
PGSC0003DMT400009175	Potato	cytosol	27.76	27.22
PGSC0003DMT400058554	Potato	cytosol	30.31	23.52
PGSC0003DMT400029386	Potato	cytosol, nucleus, peroxisome	24.93	23.47

Protein Annotations

EntrezGene:102601416	Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M1CHI8	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	EnsemblPlantsGene:PGSC0003DMG400026277	PGSC:PGSC0003DMG400026277	EnsemblPlants:PGSC0003DMT400067586	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF369	SUPFAM:SSF51197	UniParc:UPI00029567C9	RefSeq:XP_006357107.1	:	:

Description

Leucoanthocyanidin dioxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400026277]

Coordinates

chr8:+:1806398..1809094

Molecular Weight (calculated)

40092.8 Da

IEP (calculated)

7.033

GRAVY (calculated)

-0.426

Length

353 amino acids

Sequence
(BLAST)

001: MTTPIIQPSI SVKTLSESPN LKSIPSNYVN SDIYPFDFIA SEPHDYSNSI PTVDFSLLTS TDPHQRSQAI NNLNKACQDW GFFTVVNHGI QESLMKKVID
101: GTQEFFNLRE EEKKEFEGKH VLDPIRYGTS FNTSKEKAFF WRDYLKVFVH PKFHSPSKPD QYSDIMWEYC QKVRQVTKVL LGGISQGLGL EECYLEKTLE
201: MKSGFQIFIA NYYPCCPQPE LALGMPPHSD HGLLTLIIQN QVGGLQVQHQ GKWIHVNALP NSLLVNTGDH LEIFSNGKYK SNVHKVVVNN TSPRISVAVA
301: HGPSLEAIVS PASPLVQSET NYIPMKYKDY MEMQQSNQLH QKSILEQVKT QRN

Best Arabidopsis Sequence Match ( AT2G36690.1 )
(BLAST)

001: MSPSMIAPVM EEENKKYQKG VKHLCENGLT KVPTKYIWPE PDRPILTKSD KLIKPNKNLK LPLIDFAELL GPNRPHVLRT IAEACKTYGF FQVVNHGMEG
101: DVSKNMIDVC KRFFELPYEE RSKYMSSDMS APVRYGTSFN QIKDNVFCWR DFLKLYAHPL PDYLPHWPSS PSDFRSSAAT YAKETKEMFE MMVKAILESL
201: EIDGSDEAAK ELEEGSQVVV VNCYPPCPEP ELTLGMPPHS DYGFLTLLLQ DEVEGLQILY RDEWVTVDPI PGSFVVNVGD HLEIFSNGRY KSVLHRVLVN
301: STKPRISVAS LHSFPLTSVV KPSPKLVDKH NPSQYMDTDF TTFLQYITSR EPKWKNFLES RKIHHV

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4INZ9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.