Factsheet for Solyc08g006770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067586	Potato	cytosol, peroxisome, plastid	92.88	92.35
Solyc01g105660.2.1	Tomato	cytosol, plastid	69.8	68.63
VIT_03s0017g00620.t01	Wine grape	cytosol	55.27	55.11
VIT_03s0017g00710.t01	Wine grape	plastid	52.42	53.03
Solyc01g105650.2.1	Tomato	cytosol	52.14	51.4
Solyc07g054930.2.1	Tomato	cytosol, plastid	41.31	38.98
Solyc07g054920.1.1	Tomato	cytoskeleton, cytosol, peroxisome, plastid	39.89	38.67
Solyc07g054870.2.1	Tomato	mitochondrion	41.88	36.3
VIT_03s0017g00830.t01	Wine grape	plastid	54.13	35.06
Solyc11g007890.1.1	Tomato	cytosol	37.04	34.76
Solyc03g080190.2.1	Tomato	cytosol, peroxisome, plastid	32.76	34.12
Solyc06g073080.2.1	Tomato	plastid	31.05	34.06
Solyc07g054940.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	39.03	33.41
Solyc09g008560.2.1	Tomato	cytosol	35.33	32.8
Solyc10g076660.1.1	Tomato	cytosol	33.33	32.05
Solyc09g066320.1.1	Tomato	cytosol, nucleus, peroxisome	27.92	31.82
Solyc06g083910.2.1	Tomato	cytosol	30.2	31.45
Solyc02g070080.2.1	Tomato	cytosol	30.77	31.3
Solyc10g076670.1.1	Tomato	cytosol	19.66	30.94
Solyc01g090140.1.1	Tomato	plastid	19.66	30.8
Solyc07g043420.2.1	Tomato	cytosol	29.91	30.7
Solyc10g005120.1.1	Tomato	cytosol	29.06	30.54
Solyc10g085190.1.1	Tomato	cytosol	31.05	30.19
Solyc11g013110.1.1	Tomato	cytosol, plastid	30.2	30.11
Solyc03g096050.2.1	Tomato	cytosol	30.2	29.69
Solyc09g066310.2.1	Tomato	cytosol	27.64	29.48
Solyc11g010410.1.1	Tomato	cytosol	27.92	29.17
Solyc11g010400.1.1	Tomato	cytosol	27.35	28.57
Solyc10g018170.1.1	Tomato	cytosol	17.09	28.17
Solyc10g018190.1.1	Tomato	cytosol	25.93	27.83
Solyc02g083860.2.1	Tomato	cytosol	28.21	27.35
Solyc06g073580.2.1	Tomato	cytosol	27.07	26.91
Solyc11g072200.1.1	Tomato	cytosol, peroxisome, plastid	26.78	26.7
Solyc08g080040.2.1	Tomato	cytosol	30.2	25.36

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	UniProt:K4CIG5	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF369	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc08g006770.2	EnsemblPlants:Solyc08g006770.2.1
UniParc:UPI0001FBD5AC	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:1336526..1338769

Molecular Weight (calculated)

39966.8 Da

IEP (calculated)

8.046

GRAVY (calculated)

-0.448

Length

351 amino acids

Sequence
(BLAST)

001: MTTPIINQPS ISVKTLSESP NLKFIPSNYV NTNIYPLESE PHDHSNSIPT VDFSLLNSID PHQRSQAINN LNKACREWGF FMVVNHGIQE SLMNKVIDGT
101: QGFFNLREEE KKEFEGKHVL DPIRYGTSFN TSKEKTFFWR DYLKVFVHPK FHSPSKPDRY SDIMWEYCEK VRQVTKVLLG GISQGLGLEE CYLEKTLEVK
201: SGFQIFIANY YPSCPQPELA LGMPPHSDHG LLTLIIQNQV GGLQVQHQGK WIHVNALPNS LLVNTGDHLE IFSNGKYKSN IHKVVVNNTS PRISVAVAHG
301: PSLEAIVSPA SPLIQSETNY TPMKYKDYME MQQSNQLHQK SILEQVKIKR K

Best Arabidopsis Sequence Match ( AT2G36690.1 )
(BLAST)

001: MSPSMIAPVM EEENKKYQKG VKHLCENGLT KVPTKYIWPE PDRPILTKSD KLIKPNKNLK LPLIDFAELL GPNRPHVLRT IAEACKTYGF FQVVNHGMEG
101: DVSKNMIDVC KRFFELPYEE RSKYMSSDMS APVRYGTSFN QIKDNVFCWR DFLKLYAHPL PDYLPHWPSS PSDFRSSAAT YAKETKEMFE MMVKAILESL
201: EIDGSDEAAK ELEEGSQVVV VNCYPPCPEP ELTLGMPPHS DYGFLTLLLQ DEVEGLQILY RDEWVTVDPI PGSFVVNVGD HLEIFSNGRY KSVLHRVLVN
301: STKPRISVAS LHSFPLTSVV KPSPKLVDKH NPSQYMDTDF TTFLQYITSR EPKWKNFLES RKIHHV

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4INZ9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.