Factsheet for Solyc01g105660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083733	Potato	cytosol	91.32	90.56
Solyc08g006770.2.1	Tomato	plastid	68.63	69.8
VIT_03s0017g00620.t01	Wine grape	cytosol	54.06	54.83
VIT_03s0017g00710.t01	Wine grape	plastid	52.1	53.6
Solyc01g105650.2.1	Tomato	cytosol	52.38	52.53
Solyc07g054930.2.1	Tomato	cytosol, plastid	40.34	38.71
Solyc07g054920.1.1	Tomato	cytoskeleton, cytosol, peroxisome, plastid	38.38	37.85
Solyc02g070080.2.1	Tomato	cytosol	34.73	35.94
Solyc11g007890.1.1	Tomato	cytosol	37.53	35.83
VIT_03s0017g00830.t01	Wine grape	plastid	54.06	35.61
Solyc06g083910.2.1	Tomato	cytosol	33.61	35.61
Solyc07g054870.2.1	Tomato	mitochondrion	40.34	35.56
Solyc09g008560.2.1	Tomato	cytosol	37.25	35.19
Solyc03g080190.2.1	Tomato	cytosol, peroxisome, plastid	33.05	35.01
Solyc07g054940.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	39.22	34.15
Solyc06g073080.2.1	Tomato	plastid	30.53	34.06
Solyc10g005120.1.1	Tomato	cytosol	30.81	32.93
Solyc10g076660.1.1	Tomato	cytosol	33.61	32.88
Solyc11g010410.1.1	Tomato	cytosol	30.25	32.14
Solyc09g066320.1.1	Tomato	cytosol, nucleus, peroxisome	27.45	31.82
Solyc10g085190.1.1	Tomato	cytosol	31.65	31.3
Solyc03g096050.2.1	Tomato	cytosol	31.09	31.09
Solyc09g066310.2.1	Tomato	cytosol	28.57	31.0
Solyc01g090140.1.1	Tomato	plastid	19.33	30.8
Solyc11g013110.1.1	Tomato	cytosol, plastid	29.97	30.4
Solyc11g010400.1.1	Tomato	cytosol	28.57	30.36
Solyc10g076670.1.1	Tomato	cytosol	18.77	30.04
Solyc02g083860.2.1	Tomato	cytosol	30.25	29.83
Solyc07g043420.2.1	Tomato	cytosol	28.57	29.82
Solyc10g018170.1.1	Tomato	cytosol	17.37	29.11
Solyc10g018190.1.1	Tomato	cytosol	26.61	29.05
Solyc06g073580.2.1	Tomato	cytosol	28.29	28.61
Solyc11g072200.1.1	Tomato	cytosol, peroxisome, plastid	26.61	26.99
Solyc08g080040.2.1	Tomato	cytosol	29.97	25.6

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	UniProt:K4B2D6	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF369	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc01g105660.2
EnsemblPlants:Solyc01g105660.2.1	UniParc:UPI000276914A	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:93755923..93757829

Molecular Weight (calculated)

40384.1 Da

IEP (calculated)

6.870

GRAVY (calculated)

-0.413

Length

357 amino acids

Sequence
(BLAST)

001: MEATAPLVVK PSNVKELAES PDLRCIPYNY VYDSSNSSAT NDIDDSDSIP IVDFSLLTSH DSHQRSTAIH HLTKACQGWG FFMVVNHGIP ENLMKSVIDC
101: THEFFNLPEE EKHKFTGKHV LDPIRYGTSF NTSTENVFFW RDFLKVFVHP HFHSPTKPQT YRGIMSEYSE KLREVTRKLL GGISESLGLE ESYLEKDLEL
201: ESGLQIFVGN YYPPCPQPEL AMGMPPHSDQ GLLTLLIHNQ VGGLQVQHQG KWINVKALPN YSLLVNTGDH LEIFSNGKYK SNMHRAVVNN KVTRISVVVA
301: HGPSLDTIVK PASPLMEKEN SPSANYIPMK YKDYLEMQQS SRIYGKSCLE KVKIQRS

Best Arabidopsis Sequence Match ( AT2G36690.2 )
(BLAST)

001: MSPSMIAPVM EEENKKYQKG VKHLCENGLT KVPTKYIWPE PDRPILTKSD KLIKPNKNLK LPLIDFAELL GPNRPHVLRT IAEACKTYGF FQVVNHGMEG
101: DVSKNMIDVC KRFFELPYEE RSKYMSSDMS APVRYGTSFN QIKDNVFCWR DFLKLYAHPL PDYLPHWPSS PSDFRSSAAT YAKETKEMFE MMVKAILESL
201: EIDGSDEAAK ELEEGSQVVV VNCYPPCPEP ELTLGMPPHS DYGFLTLLLQ DEVEGLQILY RDEWVTVDPI PGSFVVNVGD HLEIFSNGRY KSVLHRVLVN
301: STKPRISVAS LHSFPLTSVV KPSPKLVDKH NPSQYMDTDF TTFLQYITSR EPKWKNFLES RKIHHV

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4INZ9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.