Factsheet for Solyc02g083860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g013110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51240.1	Solyc11g013110.1.1	AT5G08640.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009175	Potato	cytosol	96.41	96.94
VIT_18s0001g14310.t01	Wine grape	cytosol	83.98	84.92
VIT_04s0023g03370.t01	Wine grape	cytosol	84.53	84.3
AT3G51240.1	Thale cress	cytosol	80.94	81.84
CDX77983	Canola	cytosol	80.94	81.84
Bra036828.1-P	Field mustard	cytosol	80.66	81.56
CDX73739	Canola	cytosol	80.39	81.28
CDX90656	Canola	cytosol	78.45	81.14
CDY29008	Canola	cytosol	77.07	79.71
Bra012862.1-P	Field mustard	cytosol	76.8	79.43
GSMUA_Achr2P02770_001	Banana	cytosol	80.39	78.23
GSMUA_Achr7P16780_001	Banana	cytosol	80.11	77.75
KRH76658	Soybean	cytosol	74.86	74.25
Zm00001d001960_P001	Maize	plastid	74.03	73.22
TraesCS2B01G613300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	69.61	72.21
EES13031	Sorghum	cytosol	73.76	71.39
TraesCS2B01G521500.1	Wheat	golgi	74.31	71.16
TraesCS2A01G493500.1	Wheat	golgi	73.76	70.82
TraesCS2D01G493400.1	Wheat	golgi, nucleus	73.48	70.37
KXG27349	Sorghum	plastid	74.86	62.88
CDX76765	Canola	cytosol	40.33	61.34
Bra014831.1-P	Field mustard	cytosol	53.59	60.25
HORVU2Hr1G110130.3	Barley	mitochondrion	73.2	59.68
CDX76159	Canola	cytoskeleton, cytosol, peroxisome	48.07	59.39
Os04t0662600-00	Rice	mitochondrion, peroxisome	58.29	51.97
Solyc03g080190.2.1	Tomato	cytosol, peroxisome, plastid	33.7	36.2
Solyc06g073080.2.1	Tomato	plastid	30.94	35.0
Solyc06g083910.2.1	Tomato	cytosol	30.94	33.23
Solyc10g005120.1.1	Tomato	cytosol	30.39	32.93
Solyc03g096050.2.1	Tomato	cytosol	32.32	32.77
Solyc07g043420.2.1	Tomato	cytosol	30.94	32.75
Solyc10g076660.1.1	Tomato	cytosol	32.6	32.33
Solyc10g085190.1.1	Tomato	cytosol	30.94	31.02
Solyc02g070080.2.1	Tomato	cytosol	29.56	31.01
Solyc11g010410.1.1	Tomato	cytosol	28.45	30.65
Solyc10g018190.1.1	Tomato	cytosol	27.35	30.28
Solyc01g105660.2.1	Tomato	cytosol, plastid	29.83	30.25
Solyc09g066320.1.1	Tomato	cytosol, nucleus, peroxisome	25.14	29.55
Solyc11g007890.1.1	Tomato	cytosol	29.83	28.88
Solyc09g066310.2.1	Tomato	cytosol	26.24	28.88
Solyc07g054920.1.1	Tomato	cytoskeleton, cytosol, peroxisome, plastid	28.73	28.73
Solyc11g013110.1.1	Tomato	cytosol, plastid	27.9	28.69
Solyc06g073580.2.1	Tomato	cytosol	27.9	28.61
Solyc11g010400.1.1	Tomato	cytosol	26.52	28.57
Solyc11g072200.1.1	Tomato	cytosol, peroxisome, plastid	27.62	28.41
Solyc09g008560.2.1	Tomato	cytosol	29.56	28.31
Solyc08g006770.2.1	Tomato	plastid	27.35	28.21
Solyc01g090140.1.1	Tomato	plastid	17.4	28.12
Solyc01g105650.2.1	Tomato	cytosol	27.35	27.81
Solyc10g076670.1.1	Tomato	cytosol	17.13	27.8
Os08t0480200-01	Rice	cytosol	25.69	27.6
Solyc10g018170.1.1	Tomato	cytosol	16.02	27.23
Solyc07g054930.2.1	Tomato	cytosol, plastid	26.52	25.81
Solyc07g054940.1.1	Tomato	cytosol, mitochondrion, peroxisome, plastid	28.45	25.12
Solyc08g080040.2.1	Tomato	cytosol	28.45	24.64
Solyc07g054870.2.1	Tomato	mitochondrion	27.35	24.44
Os08t0480100-01	Rice	cytosol, endoplasmic reticulum, plastid	0.83	0.48

Protein Annotations

Gene3D:2.60.120.330	MapMan:9.2.2.4.3	ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628
GO:GO:0009813	GO:GO:0016491	GO:GO:0045486	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	UniProt:K4BAQ4	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF137	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc02g083860.2	EnsemblPlants:Solyc02g083860.2.1
UniParc:UPI000276888B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:47121864..47123927

Molecular Weight (calculated)

40884.9 Da

IEP (calculated)

5.039

GRAVY (calculated)

-0.450

Length

362 amino acids

Sequence
(BLAST)

001: MAPSTLTALA NEKTLETSFI RDEEERPKVA YNKFSDEIPV ISLQGIDDVN GRRSEICERI VNACEDWGVF QVIDHGVDAQ LISQMTKLAK EFFELPPEEK
101: LRFDMSGGKK GGFIVSSHLQ GEVVQDWREI VTYFSYPIRA RDYSRWPDKP QGWIGVTEQY SEKLMDLACK LLEVLSEAMG LEKEALTKAC VDMDQKVVVN
201: FYPKCPEPDL TLGLKRHTDP GTITLLLQDQ VGGLQATKDN GKTWITVQPV EGAFVVNLGD HGHYLSNGRF KNADHQAVVN SNSSRLSIAT FQNPAPDAKV
301: YPLKIREGEK SIMDEPITFA EMYRRKMSKD LELARLKKLA KEEKIQTEEA KLESKPIEEI LA

Best Arabidopsis Sequence Match ( AT3G51240.1 )
(BLAST)

001: MAPGTLTELA GESKLNSKFV RDEDERPKVA YNVFSDEIPV ISLAGIDDVD GKRGEICRQI VEACENWGIF QVVDHGVDTN LVADMTRLAR DFFALPPEDK
101: LRFDMSGGKK GGFIVSSHLQ GEAVQDWREI VTYFSYPVRN RDYSRWPDKP EGWVKVTEEY SERLMSLACK LLEVLSEAMG LEKESLTNAC VDMDQKIVVN
201: YYPKCPQPDL TLGLKRHTDP GTITLLLQDQ VGGLQATRDN GKTWITVQPV EGAFVVNLGD HGHFLSNGRF KNADHQAVVN SNSSRLSIAT FQNPAPDATV
301: YPLKVREGEK AILEEPITFA EMYKRKMGRD LELARLKKLA KEERDHKEVD KPVDQIFA

Arabidopsis Description

F3HNaringenin,2-oxoglutarate 3-dioxygenase [Source:UniProtKB/Swiss-Prot;Acc:Q9S818]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.