Factsheet for Os08t0480100-01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0767300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51240.1	Os02t0767300-01	AT5G08640.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0480200-01	Rice	cytosol	1.12	2.08
Os01t0832600-01	Rice	cytosol	0.8	1.37
Os04t0581000-01	Rice	cytosol	0.64	1.18
Os04t0581100-01	Rice	cytosol, peroxisome, plastid	0.64	1.14
Os05t0127500-01	Rice	cytosol	0.64	1.09
Os09t0570800-01	Rice	cytosol	0.64	1.07
Os03t0289800-01	Rice	cytosol	0.64	1.03
Os03t0122300-01	Rice	cytosol	0.48	0.88
VIT_18s0001g14310.t01	Wine grape	cytosol	0.48	0.84
CDX73739	Canola	cytosol	0.48	0.84
PGSC0003DMT400009175	Potato	cytosol	0.48	0.83
Solyc02g083860.2.1	Tomato	cytosol	0.48	0.83
VIT_04s0023g03370.t01	Wine grape	cytosol	0.48	0.83
KRH76658	Soybean	cytosol	0.48	0.82
KRH08080	Soybean	cytosol	0.48	0.81
KRH69787	Soybean	nucleus	0.48	0.8
TraesCS2A01G493500.1	Wheat	golgi	0.48	0.8
TraesCS2B01G521500.1	Wheat	golgi	0.48	0.79
TraesCS2D01G493400.1	Wheat	golgi, nucleus	0.48	0.79
Os04t0662600-00	Rice	mitochondrion, peroxisome	0.48	0.74
Os08t0560000-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	0.48	0.74
Os04t0667200-01	Rice	cytosol	0.32	0.61
Os04t0667400-01	Rice	plastid	0.32	0.6
Os07t0169600-01	Rice	plastid	0.32	0.59
TraesCS2B01G613300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	0.32	0.57
Bra012862.1-P	Field mustard	cytosol	0.32	0.57
CDX90656	Canola	cytosol	0.32	0.57
CDY29008	Canola	cytosol	0.32	0.57
Os06t0162500-01	Rice	cytosol	0.32	0.57
Bra036828.1-P	Field mustard	cytosol	0.32	0.56
CDX77983	Canola	cytosol	0.32	0.56
AT3G51240.1	Thale cress	cytosol	0.32	0.56
GSMUA_Achr2P02770_001	Banana	cytosol	0.32	0.54
Os06t0626700-00	Rice	cytosol	0.32	0.54
GSMUA_Achr7P16780_001	Banana	cytosol	0.32	0.54
Os01t0372500-00	Rice	cytosol	0.32	0.53
KRH69784	Soybean	cytosol	0.32	0.53
HORVU2Hr1G110130.3	Barley	mitochondrion	0.32	0.45
CDX76765	Canola	cytosol	0.16	0.42
CDX76159	Canola	cytoskeleton, cytosol, peroxisome	0.16	0.34
Bra014831.1-P	Field mustard	cytosol	0.16	0.31
Os02t0767300-01	Rice	cytosol	0.16	0.3
Zm00001d001960_P001	Maize	plastid	0.16	0.27
EES13031	Sorghum	cytosol	0.16	0.27
KXG27349	Sorghum	plastid	0.16	0.23

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	EntrezGene:4345847	InterPro:AAA+_ATPase
EMBL:AK101591	ProteinID:BAD09758.1	ProteinID:BAD10268.1	ProteinID:BAF23971.1	ProteinID:BAT05915.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005047	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005785
GO:GO:0006614	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016491	GO:GO:0016787	GO:GO:0055114	EMBL:JX972153	InterPro:Longin-like_dom_sf	EnsemblPlantsGene:Os08g0480100
EnsemblPlants:Os08t0480100-01	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF04086	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	UniProt:Q6Z246	SMART:SM00382	SMART:SM00962	SMART:SM00963
InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N
InterPro:Signal_recog_particl_SRP54_hlx	UniParc:UPI000023AF0B	RefSeq:XP_015649853.1	SEG:seg	:	:

Description

Signal recognition particle receptor, alpha subunit, N-terminal domain containing protein. (Os08t0480100-01);Similar to predicted protein. (Os08t0480100-02)

Coordinates

chr8:-:23717763..23722249

Molecular Weight (calculated)

68710.8 Da

IEP (calculated)

8.177

GRAVY (calculated)

-0.489

Length

624 amino acids

Sequence
(BLAST)

001: MLEELLIFTR GGLILWSSCR ALGGAALKGS PIDALIRSCL LEERSADASF SQDTYALKWT FNNDLGLVFV AVYQRMLHLL YVDDLLAAVR KEFSQIYDPK
101: RTSYDDAFNE VFRQLHLEAE ARSEEMKKNK QVTGSRPTKV TTKTNRGDTQ GSGGGRKKGD SGKDDSDGDS GKEHTLPNGN SKMQENSLKD NSHARSVVVK
201: GKENGDPNDG AFDVNKLQKM RNKGNKKNEV ASNVAKNTSK ANTKKNLKKN RVWDDTPDDK KKLDFTDPAD ERGDEVIDQV VVKQGESMMD KDDVVSSDSD
301: EEEEDGEENS GASQKKKGWF SSMFKSIAGN NVLEKSDIQP ALKALKDRLM TKNVAEEIAE KLCESVAASL EGKKLGSFTR ISSTVQTAME EALLRILTPR
401: RSIDILRDVH AAKERGKPYV IVFVGVNGVG KSTNLAKVAY WLLQHNLSVS LAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK EAIQEATRNK
501: SDVVLVDTAG RMQDNEPLMR ALSKLINLNS PDLVLFVGEA LVGNDAVDQL TKFNQKLADL SAVPTTRLID GILLTKFDTI DDKVGAALSM VYISGAPVMF
601: VGCGQSYTDL KKLNVKSIVK TLLK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.