Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytoskeleton, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51240.1 | CDX69931 | AT5G08640.1 | 18467451 |
| AT3G51240.1 | CDY21556 | AT5G08640.1 | 18467451 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014831.1-P | Field mustard | cytosol | 95.56 | 86.96 |
| CDX76765 | Canola | cytosol | 54.61 | 67.23 |
| AT3G51240.1 | Thale cress | cytosol | 67.24 | 55.03 |
| CDX73739 | Canola | cytosol | 66.55 | 54.47 |
| CDX77983 | Canola | cytosol | 66.21 | 54.19 |
| CDX90656 | Canola | cytosol | 63.48 | 53.14 |
| CDY29008 | Canola | cytosol | 63.14 | 52.86 |
| VIT_04s0023g03370.t01 | Wine grape | cytosol | 62.12 | 50.14 |
| VIT_18s0001g14310.t01 | Wine grape | cytosol | 60.41 | 49.44 |
| Solyc02g083860.2.1 | Tomato | cytosol | 59.39 | 48.07 |
| PGSC0003DMT400009175 | Potato | cytosol | 59.04 | 48.06 |
| GSMUA_Achr2P02770_001 | Banana | cytosol | 59.39 | 46.77 |
| KRH08080 | Soybean | cytosol | 59.04 | 46.51 |
| KRH69784 | Soybean | cytosol | 59.04 | 46.13 |
| GSMUA_Achr7P16780_001 | Banana | cytosol | 58.7 | 46.11 |
| KRH69787 | Soybean | nucleus | 59.04 | 46.01 |
| TraesCS2B01G613300.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 52.9 | 44.41 |
| Zm00001d001960_P001 | Maize | plastid | 54.27 | 43.44 |
| EES13031 | Sorghum | cytosol | 55.29 | 43.32 |
| TraesCS2A01G493500.1 | Wheat | golgi | 55.29 | 42.97 |
| TraesCS2D01G493400.1 | Wheat | golgi, nucleus | 55.29 | 42.86 |
| TraesCS2B01G521500.1 | Wheat | golgi | 55.29 | 42.86 |
| KXG27349 | Sorghum | plastid | 55.63 | 37.82 |
| HORVU2Hr1G110130.3 | Barley | mitochondrion | 53.58 | 35.36 |
| Os04t0662600-00 | Rice | mitochondrion, peroxisome | 40.96 | 29.56 |
| CDX99549 | Canola | vacuole | 20.14 | 27.7 |
| CDY05445 | Canola | plastid | 28.33 | 24.34 |
| CDX88109 | Canola | mitochondrion | 28.33 | 24.34 |
| CDY05412 | Canola | mitochondrion | 27.99 | 24.05 |
| CDX80450 | Canola | mitochondrion | 27.99 | 24.05 |
| CDX90761 | Canola | plastid | 28.67 | 24.0 |
| CDX86858 | Canola | cytosol | 27.65 | 23.89 |
| CDY07746 | Canola | plastid | 28.33 | 23.51 |
| CDX99550 | Canola | cytosol | 27.3 | 23.46 |
| CDY05103 | Canola | cytosol, nucleus, peroxisome | 27.99 | 23.36 |
| CDY18399 | Canola | plastid | 27.99 | 23.16 |
| CDX99548 | Canola | cytosol | 26.62 | 23.01 |
| CDY68873 | Canola | plastid | 27.3 | 22.66 |
| CDY14476 | Canola | plastid | 27.3 | 22.66 |
| CDX93319 | Canola | plastid | 27.3 | 22.66 |
| CDX69931 | Canola | cytoskeleton, cytosol, peroxisome | 25.94 | 22.62 |
| CDY21556 | Canola | cytoskeleton, cytosol, peroxisome | 25.94 | 22.62 |
| CDY32234 | Canola | cytosol, nucleus, peroxisome | 26.28 | 22.51 |
| CDY34450 | Canola | cytosol | 26.28 | 22.51 |
| CDY10816 | Canola | cytosol | 27.3 | 22.35 |
| CDY41286 | Canola | cytosol | 27.3 | 22.35 |
| CDY11329 | Canola | cytosol | 28.33 | 22.31 |
| CDY48154 | Canola | cytosol | 22.87 | 21.97 |
| CDY41520 | Canola | cytosol | 18.43 | 21.86 |
| CDY04960 | Canola | cytosol | 27.65 | 21.77 |
| CDX80966 | Canola | cytosol | 27.65 | 21.77 |
| CDY39860 | Canola | cytosol | 22.87 | 21.68 |
| CDY39565 | Canola | cytosol | 22.53 | 21.64 |
| CDY14105 | Canola | cytosol, nucleus, peroxisome | 27.99 | 21.35 |
| CDY31361 | Canola | cytosol | 22.53 | 21.29 |
| CDY01001 | Canola | cytosol | 29.35 | 21.23 |
| CDX76068 | Canola | cytosol | 26.28 | 21.04 |
| CDX94133 | Canola | cytosol | 25.6 | 20.95 |
| CDX90759 | Canola | cytosol | 21.5 | 20.86 |
| CDY08545 | Canola | cytosol | 28.67 | 20.74 |
| CDX81188 | Canola | cytosol | 22.53 | 20.62 |
| CDY02966 | Canola | cytosol | 25.6 | 20.6 |
| CDY69013 | Canola | cytosol | 21.5 | 20.52 |
| CDY41522 | Canola | cytosol | 20.14 | 19.87 |
| CDX98776 | Canola | cytosol | 26.62 | 19.85 |
| CDX74687 | Canola | cytosol | 24.23 | 19.78 |
| CDY56988 | Canola | peroxisome | 23.89 | 19.61 |
| Os08t0480200-01 | Rice | cytosol | 22.53 | 19.58 |
| CDY42687 | Canola | peroxisome | 23.89 | 19.55 |
| CDY30486 | Canola | cytosol, nucleus, peroxisome | 23.55 | 19.38 |
| CDY23457 | Canola | cytosol, nucleus, peroxisome | 22.87 | 18.82 |
| CDX75020 | Canola | cytosol | 22.87 | 18.21 |
| CDX97750 | Canola | cytosol | 12.97 | 17.19 |
| CDX70044 | Canola | cytosol, nucleus, peroxisome | 20.82 | 16.9 |
| CDY65238 | Canola | cytosol, nucleus, peroxisome | 20.48 | 16.62 |
| CDY31363 | Canola | cytosol | 22.53 | 15.64 |
| CDX72185 | Canola | nucleus | 26.62 | 15.48 |
| CDY27251 | Canola | nucleus | 25.6 | 12.08 |
| CDY41521 | Canola | cytosol, mitochondrion | 0.34 | 4.76 |
| Os08t0480100-01 | Rice | cytosol, endoplasmic reticulum, plastid | 0.34 | 0.16 |
Protein Annotations
| Gene3D:2.60.120.330 | MapMan:9.2.2.4.3 | GO:A0A078CJE9 | EnsemblPlants:CDX76159 | ProteinID:CDX76159 | ProteinID:CDX76159.1 |
| InterPro:DIOX_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 |
| GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00126454001 | InterPro:IPNS-like | InterPro:IPR005123 | InterPro:IPR027443 | InterPro:Oxoglu/Fe-dep_dioxygenase |
| PFAM:PF03171 | PFAM:PF14226 | PFscan:PS51471 | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF137 | SUPFAM:SSF51197 |
| UniParc:UPI0004EDC4CD | : | : | : | : | : |
Description
BnaA04g04230D
Coordinates
chrLK031806:+:1479090..1480523
Molecular Weight (calculated)
32589.1 Da
IEP (calculated)
5.385
GRAVY (calculated)
-0.119
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPGISGEIA GESKLYDYEF SDEIPVISLS GIDDVGRKKE EICGQIVEAC EKWGMFQAVD HGVDTNLMVN MTRLARDFFA LTTEEKLRFH MSGGEGGFSI
101: SSHLQGEAMK DWREVVVYPT YPGWLKVTAE YSERLMGLAY KVLAVLSEAM GSAKDALKNA CVDMEQKIFV TYFPKRSKPD LALGMRHTDN GIITLLLQDQ
201: FSCLQVTRDN GKTWVRVPFV PGALVINLGD IGHVSNFSHS VSNGRFMTTD HQGVVDSNSS KLFINTFLFP APHATIEEPI SYEAITMRKL KDL
101: SSHLQGEAMK DWREVVVYPT YPGWLKVTAE YSERLMGLAY KVLAVLSEAM GSAKDALKNA CVDMEQKIFV TYFPKRSKPD LALGMRHTDN GIITLLLQDQ
201: FSCLQVTRDN GKTWVRVPFV PGALVINLGD IGHVSNFSHS VSNGRFMTTD HQGVVDSNSS KLFINTFLFP APHATIEEPI SYEAITMRKL KDL
001: MAPGTLTELA GESKLNSKFV RDEDERPKVA YNVFSDEIPV ISLAGIDDVD GKRGEICRQI VEACENWGIF QVVDHGVDTN LVADMTRLAR DFFALPPEDK
101: LRFDMSGGKK GGFIVSSHLQ GEAVQDWREI VTYFSYPVRN RDYSRWPDKP EGWVKVTEEY SERLMSLACK LLEVLSEAMG LEKESLTNAC VDMDQKIVVN
201: YYPKCPQPDL TLGLKRHTDP GTITLLLQDQ VGGLQATRDN GKTWITVQPV EGAFVVNLGD HGHFLSNGRF KNADHQAVVN SNSSRLSIAT FQNPAPDATV
301: YPLKVREGEK AILEEPITFA EMYKRKMGRD LELARLKKLA KEERDHKEVD KPVDQIFA
101: LRFDMSGGKK GGFIVSSHLQ GEAVQDWREI VTYFSYPVRN RDYSRWPDKP EGWVKVTEEY SERLMSLACK LLEVLSEAMG LEKESLTNAC VDMDQKIVVN
201: YYPKCPQPDL TLGLKRHTDP GTITLLLQDQ VGGLQATRDN GKTWITVQPV EGAFVVNLGD HGHFLSNGRF KNADHQAVVN SNSSRLSIAT FQNPAPDATV
301: YPLKVREGEK AILEEPITFA EMYKRKMGRD LELARLKKLA KEERDHKEVD KPVDQIFA
Arabidopsis Description
F3HNaringenin,2-oxoglutarate 3-dioxygenase [Source:UniProtKB/Swiss-Prot;Acc:Q9S818]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.