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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • peroxisome 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY23457 Canola cytosol, nucleus, peroxisome 94.1 94.1
AT2G44800.1 Thale cress cytosol, nucleus, peroxisome, plastid 88.48 88.24
CDX74687 Canola cytosol 88.48 87.74
CDY56988 Canola peroxisome 78.65 78.43
CDY42687 Canola peroxisome 78.37 77.93
PGSC0003DMT400067044 Potato cytosol 57.3 60.71
KRH40180 Soybean plastid 57.87 58.52
PGSC0003DMT400092726 Potato cytosol, peroxisome, plastid 56.74 57.55
Solyc01g090140.1.1 Tomato plastid 33.71 53.57
PGSC0003DMT400088016 Potato cytosol 47.19 51.53
CDX70044 Canola cytosol, nucleus, peroxisome 45.79 45.15
CDY65238 Canola cytosol, nucleus, peroxisome 45.51 44.88
CDX75020 Canola cytosol 41.01 39.67
CDX80450 Canola mitochondrion 36.8 38.42
CDX88109 Canola mitochondrion 36.8 38.42
CDY05412 Canola mitochondrion 36.8 38.42
CDY05445 Canola plastid 36.52 38.12
CDX90761 Canola plastid 34.83 35.43
CDX86858 Canola cytosol 32.3 33.92
CDY07746 Canola plastid 33.43 33.71
CDX99548 Canola cytosol 32.02 33.63
CDY34450 Canola cytosol 32.3 33.63
CDY32234 Canola cytosol, nucleus, peroxisome 32.02 33.33
CDY05103 Canola cytosol, nucleus, peroxisome 32.87 33.33
CDY14476 Canola plastid 32.87 33.14
CDX99549 Canola vacuole 19.66 32.86
CDX99550 Canola cytosol 31.18 32.55
CDY18399 Canola plastid 32.3 32.49
CDY68873 Canola plastid 31.74 32.01
CDX93319 Canola plastid 31.74 32.01
CDY41522 Canola cytosol 26.69 31.99
CDX76068 Canola cytosol 32.87 31.97
CDY69013 Canola cytosol 27.53 31.92
CDY02966 Canola cytosol 32.58 31.87
CDY21556 Canola cytoskeleton, cytosol, peroxisome 30.06 31.85
CDX69931 Canola cytoskeleton, cytosol, peroxisome 29.78 31.55
CDX90759 Canola cytosol 26.69 31.46
CDY11329 Canola cytosol 32.3 30.91
CDY04960 Canola cytosol 32.3 30.91
CDY48154 Canola cytosol 26.4 30.82
CDY39565 Canola cytosol 26.12 30.49
CDX80966 Canola cytosol 31.74 30.38
CDY41520 Canola cytosol 20.79 29.96
CDY14105 Canola cytosol, nucleus, peroxisome 32.3 29.95
CDY01001 Canola cytosol 33.99 29.88
CDY08545 Canola cytosol 33.71 29.63
CDY39860 Canola cytosol 25.56 29.45
CDY31361 Canola cytosol 25.28 29.03
CDX81188 Canola cytosol 25.84 28.75
CDX90656 Canola cytosol 27.53 28.0
CDX77983 Canola cytosol 28.09 27.93
CDX73739 Canola cytosol 27.81 27.65
CDY29008 Canola cytosol 26.97 27.43
CDY41286 Canola cytosol 26.97 26.82
CDX94133 Canola cytosol 26.69 26.54
CDY10816 Canola cytosol 26.4 26.26
CDX97750 Canola cytosol 16.29 26.24
CDX98776 Canola cytosol 26.69 24.17
CDX76159 Canola cytoskeleton, cytosol, peroxisome 19.38 23.55
CDX76765 Canola cytosol 15.73 23.53
CDX72185 Canola nucleus 32.87 23.21
CDY31363 Canola cytosol 25.28 21.33
CDY41521 Canola cytosol, mitochondrion 1.12 19.05
CDY27251 Canola nucleus 32.58 18.68
Protein Annotations
Gene3D:2.60.120.330MapMan:50.1.13GO:A0A078GYB6UniProt:A0A078GYB6EnsemblPlants:CDY30486ProteinID:CDY30486
ProteinID:CDY30486.1InterPro:DIOX_NGO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0008150
GO:GO:0008152GO:GO:0016491GO:GO:0046872GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00045195001InterPro:IPNS-like
InterPro:IPR005123InterPro:IPR027443InterPro:Oxoglu/Fe-dep_dioxygenasePFAM:PF03171PFAM:PF14226PFscan:PS51471
PANTHER:PTHR10209PANTHER:PTHR10209:SF224SUPFAM:SSF51197UniParc:UPI0004EEEE31::
Description
BnaA04g25870DBnaA04g25870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYB6]
Coordinates
chrLK032253:+:455954..457444
Molecular Weight (calculated)
39948.7 Da
IEP (calculated)
5.547
GRAVY (calculated)
-0.241
Length
356 amino acids
Sequence
(BLAST)
001: MEETMKSLLD DSFESAMTLT NSGAPQVPGR YVLPPSQRPA LGSSLGTREI TLPIIDLSLL HEPLLRSSVI QEINMACKEF GFFQVINHGI PPSVVRDALD
101: AATQFFDLPV EEKMLLVSAD VHKPVRYGTS LNHSTDRVHY WRDFIKHYSY PLSKWIDMWP SNPPCYKDKV GKYAEATHVL HKQLIEAISE SLGLEKDYLQ
201: EQTEEGSQVM AVNCYPACPE PEITLGMPPH SDFGSLTILL QSSQGLQIMD SNKNWISVPY IEGALIVQLG DQVEVMSNGI YKSVIHRVTV NKDYKRLSFA
301: SLHSLPLHKR ISPAPELVGN NAPAYGEFSF NDFLDYISSN DCVQQRFIDT LKKSNS
Best Arabidopsis Sequence Match ( AT2G44800.1 )
(BLAST)
001: MEETKMSLLD DSFTSAMTLT NSGVPQVPDR YVLPPSQRPA LGSSLGTSET TLPVIDLSLL HQPFLRSLAI HEISMACKEF GFFQVINHGI PSSVVNDALD
101: AATQFFDLPV EEKMLLVSAN VHEPVRYGTS LNHSTDRVHY WRDFIKHYSH PLSKWIDMWP SNPPCYKDKV GKYAEATHLL HKQLIEAISE SLGLEKNYLQ
201: EEIEEGSQVM AVNCYPACPE PEMALGMPPH SDFSSLTILL QSSKGLQIMD CNKNWVCVPY IEGALIVQLG DQVEVMSNGI YKSVIHRVTV NKEVKRLSFA
301: SLHSLPLHKK ISPAPKLVNP NNAPAYGEFS FNDFLNYISS NDFIQERFID TIKKSSS
Arabidopsis Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IV21]
SUBAcon: [peroxisome,plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.