CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05445	Canola	plastid	97.07	97.07
AT5G24530.1	Thale cress	mitochondrion	88.27	88.27
CDX88109	Canola	mitochondrion	87.68	87.68
CDX80450	Canola	mitochondrion	87.1	87.1
KRH64291	Soybean	cytosol	70.38	71.01
KRH53636	Soybean	cytosol	69.79	70.41
VIT_16s0098g00860.t01	Wine grape	cytosol, peroxisome, plastid	67.45	68.05
VIT_13s0047g00210.t01	Wine grape	cytosol	66.86	67.66
PGSC0003DMT400069218	Potato	cytosol	67.16	66.96
Solyc06g073080.2.1	Tomato	plastid	61.58	65.62
Solyc03g080190.2.1	Tomato	cytosol, peroxisome, plastid	64.81	65.58
PGSC0003DMT400001570	Potato	cytosol	64.22	64.99
GSMUA_Achr2P10240_001	Banana	cytosol, nucleus, peroxisome	64.22	64.6
GSMUA_Achr1P03620_001	Banana	cytosol, nucleus, peroxisome	62.46	63.2
GSMUA_Achr4P30130_001	Banana	cytosol, nucleus, peroxisome	62.46	63.2
KXG26978	Sorghum	cytosol	63.05	62.68
Os04t0581000-01	Rice	cytosol	62.46	62.65
GSMUA_Achr8P12320_001	Banana	cytosol, nucleus, peroxisome	62.17	62.17
EER94585	Sorghum	cytosol	61.0	61.9
TraesCS4D01G341800.1	Wheat	cytosol	61.0	61.9
Os03t0122300-01	Rice	cytosol	61.88	61.7
GSMUA_Achr5P10230_001	Banana	cytosol, nucleus, peroxisome	60.7	61.42
HORVU4Hr1G084810.2	Barley	cytosol, peroxisome, plastid	60.41	61.31
EER92960	Sorghum	cytosol	60.41	61.31
TraesCS2A01G395000.1	Wheat	cytosol	61.0	61.18
TraesCS4B01G346900.1	Wheat	cytosol	59.82	60.71
TraesCS2D01G392800.1	Wheat	cytosol	60.41	60.59
HORVU0Hr1G005300.1	Barley	cytosol	60.41	60.59
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	62.46	60.34
Zm00001d029744_P001	Maize	cytosol	59.24	60.12
GSMUA_Achr1P00770_001	Banana	cytosol	59.24	59.94
GSMUA_Achr5P12830_001	Banana	cytosol	59.53	59.88
TraesCS2B01G413000.1	Wheat	cytosol, nucleus, peroxisome	59.53	59.71
Zm00001d027423_P002	Maize	cytosol, nucleus, peroxisome	60.12	55.56
TraesCS5A01G515600.2	Wheat	cytosol	60.7	53.91
CDX90761	Canola	plastid	51.91	50.57
CDX99548	Canola	cytosol	48.97	49.26
CDX86858	Canola	cytosol	48.68	48.97
CDY05103	Canola	cytosol, nucleus, peroxisome	49.85	48.43
CDX99549	Canola	vacuole	29.91	47.89
CDX99550	Canola	cytosol	47.8	47.8
CDX90759	Canola	cytosol	39.88	45.03
CDY30486	Canola	cytosol, nucleus, peroxisome	38.42	36.8
CDY23457	Canola	cytosol, nucleus, peroxisome	38.12	36.52
CDY56988	Canola	peroxisome	38.12	36.41
CDY42687	Canola	peroxisome	37.24	35.47
CDX74687	Canola	cytosol	37.24	35.38
CDX90656	Canola	cytosol	35.48	34.57
CDY32234	Canola	cytosol, nucleus, peroxisome	34.6	34.5
CDY34450	Canola	cytosol	34.6	34.5
CDY29008	Canola	cytosol	34.6	33.71
CDX73739	Canola	cytosol	35.19	33.52
CDX75020	Canola	cytosol	35.78	33.15
CDX77983	Canola	cytosol	34.6	32.96
CDY04960	Canola	cytosol	35.48	32.53
CDY39860	Canola	cytosol	29.33	32.36
CDX93319	Canola	plastid	33.14	32.01
CDY68873	Canola	plastid	33.14	32.01
CDX76068	Canola	cytosol	34.31	31.97
CDY18399	Canola	plastid	33.14	31.92
CDY02966	Canola	cytosol	34.02	31.87
CDY65238	Canola	cytosol, nucleus, peroxisome	33.72	31.86
CDY07746	Canola	plastid	32.84	31.73
CDX70044	Canola	cytosol, nucleus, peroxisome	33.43	31.58
CDY14105	Canola	cytosol, nucleus, peroxisome	35.48	31.51
CDY39565	Canola	cytosol	28.15	31.48
CDY11329	Canola	cytosol	34.31	31.45
CDY31361	Canola	cytosol	28.45	31.29
CDX80966	Canola	cytosol	34.02	31.18
CDY14476	Canola	plastid	32.26	31.16
CDY48154	Canola	cytosol	27.86	31.15
HORVU4Hr1G089330.2	Barley	plastid	39.3	30.8
CDY69013	Canola	cytosol	27.27	30.29
CDY41286	Canola	cytosol	31.09	29.61
CDY10816	Canola	cytosol	31.09	29.61
CDY41520	Canola	cytosol	21.41	29.55
CDX69931	Canola	cytoskeleton, cytosol, peroxisome	29.03	29.46
CDY21556	Canola	cytoskeleton, cytosol, peroxisome	29.03	29.46
CDX94133	Canola	cytosol	30.79	29.33
CDY41522	Canola	cytosol	25.51	29.29
CDX81188	Canola	cytosol	26.69	28.44
CDX76765	Canola	cytosol	19.65	28.15
CDY01001	Canola	cytosol	33.43	28.15
CDX97750	Canola	cytosol	18.18	28.05
CDX76159	Canola	cytoskeleton, cytosol, peroxisome	24.05	27.99
CDY08545	Canola	cytosol	32.55	27.41
CDX98776	Canola	cytosol	30.5	26.46
CDY31363	Canola	cytosol	28.74	23.22
CDX72185	Canola	nucleus	34.31	23.21
CDY27251	Canola	nucleus	33.72	18.52
CDY41521	Canola	cytosol, mitochondrion	0.59	9.52

Protein Annotations

Gene3D:2.60.120.330	MapMan:9.2.2.3.1	GO:A0A078EWN2	EnsemblPlants:CDY05412	ProteinID:CDY05412	ProteinID:CDY05412.1
ncoils:Coil	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00120313001	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF371
SUPFAM:SSF51197	UniParc:UPI0000F35E7C	SEG:seg	:	:	:

Description

BnaC02g41200D

Coordinates

chrLK031961:-:1010966..1017141

Molecular Weight (calculated)

39239.6 Da

IEP (calculated)

5.788

GRAVY (calculated)

-0.481

Length

341 amino acids

Sequence
(BLAST)

001: MAAKLLSTGF RHSTLPENYV RPLSDRPRLS QVSQLEDFPL IDISSTDRSR LVQKIHQACA RFGFFQVINH GVSKATIDEM VSVAHEFFGM PMDEKMKLYS
101: DDPTKTPRLS TSFNVKEEEV NNWRDYLRLH CYPIDKYVHE WPSNPPSFKE VVSKYSREIR ELGLKIEELI SESLGLEKDY MKKVLGEQGQ HMAVNYYPPC
201: PEPELTYGLP AHTDPNALTI LLQDATVCGL QILIDGHWFA VNPRPDAFVI NIGDQLQALS NGVYKSVWHR AVTNTENPRL SIASFMCPDN GAVISPAKPL
301: WEAKEEEAKP IYRDYTYAEY YKKFWSRNLD QEHCLENFLN D

Best Arabidopsis Sequence Match ( AT5G24530.1 )
(BLAST)

001: MAAKLISTGF RHTTLPENYV RPISDRPRLS EVSQLEDFPL IDLSSTDRSF LIQQIHQACA RFGFFQVINH GVNKQIIDEM VSVAREFFSM SMEEKMKLYS
101: DDPTKTTRLS TSFNVKKEEV NNWRDYLRLH CYPIHKYVNE WPSNPPSFKE IVSKYSREVR EVGFKIEELI SESLGLEKDY MKKVLGEQGQ HMAVNYYPPC
201: PEPELTYGLP AHTDPNALTI LLQDTTVCGL QILIDGQWFA VNPHPDAFVI NIGDQLQALS NGVYKSVWHR AVTNTENPRL SVASFLCPAD CAVMSPAKPL
301: WEAEDDETKP VYKDFTYAEY YKKFWSRNLD QEHCLENFLN N

Arabidopsis Description

DMR6Protein DOWNY MILDEW RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.