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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:
  • cytosol 2
  • peroxisome 1
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytoskeleton, cytosol, peroxisome
Any Predictor:cytoskeleton, cytosol, peroxisome
BaCelLo:cytosol
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69618
CDX70528
CDX73739
CDX76159
CDX76765
CDX77983
CDX78547
CDX90656
CDX91090
CDX95155
CDY07114
CDY09836
CDY21246
CDY29008
CDY52372

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G08640.1 CDX73739 AT3G51240.1 18467451
AT5G08640.1 CDX76159 AT3G51240.1 18467451
AT5G08640.1 CDX76765 AT3G51240.1 18467451
AT5G08640.1 CDX77983 AT3G51240.1 18467451
AT5G08640.1 CDX90656 AT3G51240.1 18467451
AT5G08640.1 CDY29008 AT3G51240.1 18467451
AT5G08640.1 CDX69618 AT5G13930.1 18467451
AT5G08640.1 CDX70528 AT5G13930.1 18467451
AT5G08640.1 CDX78547 AT5G13930.1 18467451
AT5G08640.1 CDX91090 AT5G13930.1 18467451
AT5G08640.1 CDY07114 AT5G13930.1 18467451
AT5G08640.1 CDY09836 AT5G13930.1 18467451
AT5G08640.1 CDX95155 AT5G42800.1 18467451
AT5G08640.1 CDY21246 AT5G42800.1 18467451
AT5G08640.1 CDY52372 AT5G42800.1 18467451
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009358.1-P Field mustard cytoskeleton, cytosol, peroxisome 99.11 99.11
CDY21556 Canola cytoskeleton, cytosol, peroxisome 99.11 99.11
AT5G08640.1 Thale cress cytosol 91.37 91.37
GSMUA_Achr3P07030_001 Banana cytosol 63.99 64.56
CDY41522 Canola cytosol 56.85 64.31
VIT_18s0001g03490.t01 Wine grape cytosol 63.99 64.18
VIT_18s0001g03470.t01 Wine grape cytosol 60.42 63.04
CDY48154 Canola cytosol 56.85 62.62
CDY69013 Canola cytosol 56.85 62.22
CDY39565 Canola cytosol 56.25 61.97
GSMUA_Achr10P... Banana cytosol 57.14 61.34
GSMUA_Achr10P... Banana cytosol 61.01 61.19
CDY41520 Canola cytosol 44.64 60.73
Solyc11g013110.1.1 Tomato cytosol, plastid 62.8 59.94
PGSC0003DMT400036565 Potato cytosol 62.5 59.66
CDY39860 Canola cytosol 54.76 59.55
KRH18787 Soybean cytosol 58.63 58.98
KRH53203 Soybean cytosol 58.33 58.86
CDY31361 Canola cytosol 53.87 58.39
GSMUA_Achr8P23330_001 Banana cytosol 56.85 57.36
CDX81188 Canola cytosol 54.17 56.88
KRH16579 Soybean cytosol, mitochondrion 50.89 56.62
Os02t0767300-01 Rice cytosol 54.76 55.59
CDX97750 Canola cytosol 36.31 55.2
TraesCS6D01G310700.1 Wheat plastid 53.27 53.59
TraesCS6B01G362100.1 Wheat cytosol 52.98 53.29
EES07584 Sorghum cytosol 52.38 53.01
TraesCS6A01G331400.1 Wheat plastid 52.38 52.69
CDY41521 Canola cytosol, mitochondrion 3.27 52.38
Zm00001d018184_P001 Maize endoplasmic reticulum 47.92 51.11
Zm00001d018181_P001 Maize endoplasmic reticulum, nucleus 47.92 51.11
TraesCS4D01G339800.1 Wheat cytosol, plastid 50.89 50.89
TraesCS4B01G344900.1 Wheat cytosol, plastid 46.43 50.49
TraesCS5A01G513700.1 Wheat cytosol, plastid 50.0 50.0
HORVU6Hr1G056710.2 Barley cytosol, peroxisome 10.71 50.0
TraesCS4B01G344800.1 Wheat cytosol 47.92 49.69
EES00073 Sorghum cytosol 45.24 49.35
CDY31363 Canola cytosol 54.17 43.13
HORVU6Hr1G080360.1 Barley plastid 42.26 40.57
CDY41286 Canola cytosol 39.88 37.43
CDY10816 Canola cytosol 39.58 37.15
CDX94133 Canola cytosol 38.69 36.31
CDY14476 Canola plastid 37.5 35.69
CDY07746 Canola plastid 37.5 35.69
CDX99549 Canola vacuole 22.62 35.68
CDY18399 Canola plastid 36.9 35.03
CDX93319 Canola plastid 36.61 34.84
CDY68873 Canola plastid 36.61 34.84
CDY02966 Canola cytosol 37.2 34.34
CDY04960 Canola cytosol 37.8 34.14
CDX76068 Canola cytosol 36.9 33.88
CDX80966 Canola cytosol 37.5 33.87
CDY11329 Canola cytosol 37.5 33.87
CDX98776 Canola cytosol 39.58 33.84
CDX86858 Canola cytosol 33.93 33.63
CDY34450 Canola cytosol 33.93 33.33
CDY14105 Canola cytosol, nucleus, peroxisome 37.8 33.07
CDY32234 Canola cytosol, nucleus, peroxisome 33.63 33.04
CDY05103 Canola cytosol, nucleus, peroxisome 34.23 32.76
CDX99548 Canola cytosol 33.04 32.74
CDX90761 Canola plastid 33.93 32.57
VIT_18s0001g03510.t01 Wine grape cytosol 64.29 31.76
CDX99550 Canola cytosol 32.14 31.67
CDY56988 Canola peroxisome 33.33 31.37
CDY01001 Canola cytosol 37.8 31.36
CDY08545 Canola cytosol 37.8 31.36
CDY42687 Canola peroxisome 32.74 30.73
CDX80450 Canola mitochondrion 30.95 30.5
CDY23457 Canola cytosol, nucleus, peroxisome 32.14 30.34
CDX88109 Canola mitochondrion 30.65 30.21
CDX90759 Canola cytosol 27.08 30.13
CDY30486 Canola cytosol, nucleus, peroxisome 31.55 29.78
CDX90656 Canola cytosol 30.95 29.71
CDY29008 Canola cytosol 30.95 29.71
CDX77983 Canola cytosol 31.25 29.33
CDX73739 Canola cytosol 31.25 29.33
CDY05445 Canola plastid 29.76 29.33
CDY05412 Canola mitochondrion 29.46 29.03
CDX74687 Canola cytosol 30.95 28.97
CDX75020 Canola cytosol 30.36 27.72
CDX70044 Canola cytosol, nucleus, peroxisome 28.57 26.59
CDY65238 Canola cytosol, nucleus, peroxisome 28.57 26.59
CDX76159 Canola cytoskeleton, cytosol, peroxisome 22.62 25.94
CDX72185 Canola nucleus 36.9 24.6
CDX76765 Canola cytosol 16.67 23.53
CDY27251 Canola nucleus 35.71 19.32
Protein Annotations
Gene3D:2.60.120.330MapMan:9.2.2.5.1GO:A0A078BYX4EnsemblPlants:CDX69931ProteinID:CDX69931ProteinID:CDX69931.1
InterPro:DIOX_NGO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0016491
GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00136007001InterPro:IPNS-likeInterPro:IPR005123InterPro:IPR027443InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171PFAM:PF14226PFscan:PS51471PANTHER:PTHR10209PANTHER:PTHR10209:SF382SUPFAM:SSF51197
UniParc:UPI0004EE97B0SEG:seg::::
Description
BnaA10g22800D
Coordinates
chrLK031790:-:2389317..2391190
Molecular Weight (calculated)
38366.9 Da
IEP (calculated)
5.321
GRAVY (calculated)
-0.415
Length
336 amino acids
Sequence
(BLAST)
001: MEIERVQDIS SSSLHTEAIP LEFIRSEKEQ PAITTFRGPV PAIPVVDLSD PDEESVERAV VKASEEWGIF QVVNHGIPTE LIKRLQEVGR TFFELPSAEK
101: ESVAKPVDAK DIEGYGTKLQ KEVEGKKAWV DHLFHRIWPP SCVNYSFWPK NPPEYREVNE EYALHVKKLS ETLLGILSEG LGLRREALRE GLGGDLAEYM
201: MKINYYPPCP RPDLALGVPA HTDLSGITLL VPNEVPGLQV FKDDHWFDAE YIPSAVIVHI GDQILRLSNG RYKNVLHRTT VDKDRTRMSW PVFLEPHREM
301: IVGPLPELIS DDYPPKYKPF AFKDYSYRKL NKLPLD
Best Arabidopsis Sequence Match ( AT5G08640.1 )
(BLAST)
001: MEVERVQDIS SSSLLTEAIP LEFIRSEKEQ PAITTFRGPT PAIPVVDLSD PDEESVRRAV VKASEEWGLF QVVNHGIPTE LIRRLQDVGR KFFELPSSEK
101: ESVAKPEDSK DIEGYGTKLQ KDPEGKKAWV DHLFHRIWPP SCVNYRFWPK NPPEYREVNE EYAVHVKKLS ETLLGILSDG LGLKRDALKE GLGGEMAEYM
201: MKINYYPPCP RPDLALGVPA HTDLSGITLL VPNEVPGLQV FKDDHWFDAE YIPSAVIVHI GDQILRLSNG RYKNVLHRTT VDKEKTRMSW PVFLEPPREK
301: IVGPLPELTG DDNPPKFKPF AFKDYSYRKL NKLPLD
Arabidopsis Description
FLS1Flavonol synthase/flavanone 3-hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q96330]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.