Factsheet for VIT_18s0001g03510.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g02090.t01
VIT_04s0023g03370.t01
VIT_05s0136g00260.t01
VIT_14s0068g00920.t01
VIT_14s0068g00930.t01
VIT_18s0001g14310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08640.1	VIT_04s0023g03370.t01	AT3G51240.1	18467451
AT5G08640.1	VIT_18s0001g14310.t01	AT3G51240.1	18467451
AT5G08640.1	VIT_05s0136g00260.t01	AT5G13930.1	18467451
AT5G08640.1	VIT_14s0068g00920.t01	AT5G13930.1	18467451
AT5G08640.1	VIT_14s0068g00930.t01	AT5G13930.1	18467451
AT5G08640.1	VIT_04s0023g02090.t01	AT5G42800.1	18467451
AT5G63590.1	VIT_05s0136g00260.t01	AT5G13930.1	18467451
AT5G63590.1	VIT_14s0068g00920.t01	AT5G13930.1	18467451
AT5G63590.1	VIT_14s0068g00930.t01	AT5G13930.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g03470.t01	Wine grape	cytosol	38.82	81.99
VIT_18s0001g03490.t01	Wine grape	cytosol	39.41	80.0
KRH18787	Soybean	cytosol	34.12	69.46
KRH53203	Soybean	cytosol	33.82	69.07
KRH16579	Soybean	cytosol, mitochondrion	30.0	67.55
PGSC0003DMT400036565	Potato	cytosol	34.56	66.76
GSMUA_Achr3P07030_001	Banana	cytosol	32.21	65.77
Solyc11g013110.1.1	Tomato	cytosol, plastid	33.97	65.62
AT5G08640.1	Thale cress	cytosol	32.06	64.88
Bra009358.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	31.91	64.58
CDY21556	Canola	cytoskeleton, cytosol, peroxisome	31.91	64.58
CDX69931	Canola	cytoskeleton, cytosol, peroxisome	31.76	64.29
GSMUA_Achr10P...	Banana	cytosol	29.26	63.58
GSMUA_Achr10P...	Banana	cytosol	30.74	62.39
GSMUA_Achr8P23330_001	Banana	cytosol	30.15	61.56
Os02t0767300-01	Rice	cytosol	27.5	56.5
EES07584	Sorghum	cytosol	27.21	55.72
TraesCS6B01G362100.1	Wheat	cytosol	26.76	54.49
TraesCS6D01G310700.1	Wheat	plastid	26.76	54.49
Zm00001d018184_P001	Maize	endoplasmic reticulum	24.85	53.65
Zm00001d018181_P001	Maize	endoplasmic reticulum, nucleus	24.85	53.65
TraesCS6A01G331400.1	Wheat	plastid	26.18	53.29
VIT_18s0001g03430.t01	Wine grape	cytosol	25.88	53.01
AT5G63590.1	Thale cress	cytoskeleton, cytosol, peroxisome	23.38	51.62
HORVU6Hr1G056710.2	Barley	cytosol, peroxisome	5.44	51.39
CDY39565	Canola	cytosol	22.79	50.82
Bra038648.1-P	Field mustard	cytosol	22.06	50.51
CDY48154	Canola	cytosol	22.65	50.49
Bra018076.1-P	Field mustard	cytosol	22.65	50.49
CDY41522	Canola	cytosol	21.91	50.17
TraesCS4B01G344800.1	Wheat	cytosol	23.68	49.69
Bra037747.1-P	Field mustard	cytosol	22.94	49.68
CDY69013	Canola	cytosol	22.35	49.51
Bra038647.1-P	Field mustard	cytosol	22.21	49.19
AT5G43935.1	Thale cress	cytosol	21.18	49.15
TraesCS4B01G344900.1	Wheat	cytosol, plastid	22.21	48.87
TraesCS4D01G339800.1	Wheat	cytosol, plastid	24.12	48.81
TraesCS5A01G513700.1	Wheat	cytosol, plastid	23.97	48.51
AT5G63580.1	Thale cress	cytoskeleton, cytosol, peroxisome	17.65	48.0
CDY39860	Canola	cytosol	21.32	46.93
CDX81188	Canola	cytosol	22.06	46.88
AT5G63595.1	Thale cress	cytoskeleton, cytosol, peroxisome	19.12	46.59
CDX97750	Canola	cytosol	15.0	46.15
CDY41520	Canola	cytosol	16.76	46.15
EES00073	Sorghum	cytosol	20.88	46.1
CDY31361	Canola	cytosol	20.74	45.48
Bra029211.1-P	Field mustard	cytosol	20.59	45.16
AT5G63600.2	Thale cress	cytosol	21.47	44.79
HORVU6Hr1G080360.1	Barley	plastid	21.03	40.86
VIT_02s0025g04720.t01	Wine grape	cytosol, peroxisome, plastid	21.18	40.56
VIT_13s0047g00210.t01	Wine grape	cytosol	18.24	36.8
VIT_16s0098g00860.t01	Wine grape	cytosol, peroxisome, plastid	18.24	36.69
VIT_16s0013g00730.t01	Wine grape	cytosol	10.29	35.0
VIT_13s0067g01020.t01	Wine grape	cytosol	18.09	34.26
VIT_08s0105g00380.t01	Wine grape	cytosol	17.94	34.08
CDY31363	Canola	cytosol	21.03	33.89
Bra029212.1-P	Field mustard	cytosol	20.88	33.65
VIT_02s0025g02960.t01	Wine grape	cytosol	16.91	33.05
VIT_03s0017g02350.t01	Wine grape	cytosol	17.21	32.96
VIT_15s0048g02430.t01	Wine grape	cytosol	16.18	31.98
VIT_02s0025g02970.t01	Wine grape	cytosol	16.18	31.61
VIT_18s0001g06690.t01	Wine grape	cytosol	15.59	31.55
VIT_03s0017g00620.t01	Wine grape	cytosol	15.44	29.83
VIT_00s0250g00090.t01	Wine grape	cytosol	16.18	29.41
VIT_07s0005g03150.t01	Wine grape	cytosol, peroxisome, plastid	14.41	28.74
CDY41521	Canola	cytosol, mitochondrion	0.88	28.57
VIT_03s0017g00710.t01	Wine grape	plastid	14.56	28.53
VIT_08s0007g04540.t01	Wine grape	cytosol	15.74	28.38
VIT_04s0023g03370.t01	Wine grape	cytosol	15.0	28.1
VIT_18s0001g14310.t01	Wine grape	cytosol	14.71	27.93
VIT_16s0013g00740.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	13.97	26.76
VIT_03s0017g00830.t01	Wine grape	plastid	15.44	19.37

Protein Annotations

EntrezGene:100243852	wikigene:100243852	EntrezGene:100249002	wikigene:100249002	Gene3D:2.60.120.330	MapMan:9.2.2.5.1
EMBL:AB086056	EMBL:AB213565	EMBL:AM473498	ProteinID:BAE75807	ProteinID:BAE75807.1	ProteinID:BAE75809
ProteinID:BAE75809.1	ProteinID:CAN68377	ProteinID:CAN68377.1	ProteinID:CAN68378	ProteinID:CAN68378.1	ProteinID:CCB45509
ProteinID:CCB45509.1	InterPro:DIOX_N	UniProt:F6H0U0	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016491	GO:GO:0045431
GO:GO:0046872	GO:GO:0051555	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
EntrezGene:LOC100243852	wikigene:LOC100243852	EntrezGene:LOC100249002	wikigene:LOC100249002	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF165	SUPFAM:SSF51197	UniParc:UPI000210A649
ArrayExpress:VIT_18s0001g03510	EnsemblPlantsGene:VIT_18s0001g03510	EnsemblPlants:VIT_18s0001g03510.t01	RefSeq:XP_002284410	RefSeq:XP_002284410.1	RefSeq:XP_002284413
RefSeq:XP_002284413.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:3354104..3359003

Molecular Weight (calculated)

77648.2 Da

IEP (calculated)

5.960

GRAVY (calculated)

-0.355

Length

680 amino acids

Sequence
(BLAST)

001: MAVERVQTIA FSSILVDTIP PEFIRSEKEQ PALTTCLGCI PQVPTIDFSD PDEGNLTRLI AEASSEWAMF QIVNHGIPSE VITNLQKAGK EFFELPQEEK
101: ELYAKPPDSK SIEGYGSKLQ KEVEGKKAWV DHLFHNIWPP SAINYQYWPK NPPSYRAVNE EYCKWVQPVG HRLLSLLSLG LGLEKNELKE NVGGDELKYL
201: LKINYYPPCP RPDLALGVVA HTDMSSITIL VPNEVQGLQV FRDDHWFDVK YIPDALVIHI GDQLEILSNG KYKSVLHRTT VTKEITRMSW PVFLEPPSEL
301: AIGPLPKLIN EKNPPKYQKK KYCDYRIRFY CVNLTLLQAV LFQPPTDIER VQAIAFSSLS EGTIPPEFIR SEKEEPAITT FHGYVPQVPT IDFSDPDEAN
401: LTRLIAVASM EWGIFQIVNH GIPFHVITSL QKVGREFFEL SQEEKELYAK PPDSKSIEGY GTKLQKEVEG KKAWVDHLFH KVWPPSAINY HFWPKNPPSY
501: RDANEEYTKC LRGVADRLFS RLSLGLGLDE DELKKSVGGD ELTYLLKINY YPPCPRPDLA LGVVAHTDMS SITMLVPNEV QGLQVFRDDH WFDVKYIPNA
601: LVIHIGDQLE ILSNGKYRSV LHRATVNKEM TRMSWPVFLE PPPELAIGPL SKLINEENPP KYKEKKYCDY VYCKLNKIPQ

Best Arabidopsis Sequence Match ( AT5G08640.1 )
(BLAST)

001: MEVERVQDIS SSSLLTEAIP LEFIRSEKEQ PAITTFRGPT PAIPVVDLSD PDEESVRRAV VKASEEWGLF QVVNHGIPTE LIRRLQDVGR KFFELPSSEK
101: ESVAKPEDSK DIEGYGTKLQ KDPEGKKAWV DHLFHRIWPP SCVNYRFWPK NPPEYREVNE EYAVHVKKLS ETLLGILSDG LGLKRDALKE GLGGEMAEYM
201: MKINYYPPCP RPDLALGVPA HTDLSGITLL VPNEVPGLQV FKDDHWFDAE YIPSAVIVHI GDQILRLSNG RYKNVLHRTT VDKEKTRMSW PVFLEPPREK
301: IVGPLPELTG DDNPPKFKPF AFKDYSYRKL NKLPLD

Arabidopsis Description

FLS1Flavonol synthase/flavanone 3-hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q96330]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.