Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- plastid 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G513700.1 | Wheat | cytosol, plastid | 94.75 | 91.37 |
| TraesCS4D01G339800.1 | Wheat | cytosol, plastid | 91.98 | 88.69 |
| TraesCS4B01G344900.1 | Wheat | cytosol, plastid | 83.02 | 87.06 |
| TraesCS6B01G362100.1 | Wheat | cytosol | 71.6 | 69.46 |
| Os02t0767300-01 | Rice | cytosol | 66.67 | 65.26 |
| EES07584 | Sorghum | cytosol | 65.12 | 63.55 |
| Zm00001d018184_P001 | Maize | endoplasmic reticulum | 60.19 | 61.9 |
| Zm00001d018181_P001 | Maize | endoplasmic reticulum, nucleus | 60.19 | 61.9 |
| EES00073 | Sorghum | cytosol | 52.16 | 54.87 |
| GSMUA_Achr8P23330_001 | Banana | cytosol | 54.63 | 53.15 |
| GSMUA_Achr10P... | Banana | cytosol | 54.94 | 53.13 |
| GSMUA_Achr10P... | Banana | cytosol | 50.31 | 52.08 |
| VIT_18s0001g03470.t01 | Wine grape | cytosol | 51.54 | 51.86 |
| GSMUA_Achr3P07030_001 | Banana | cytosol | 52.16 | 50.75 |
| AT5G08640.1 | Thale cress | cytosol | 50.93 | 49.11 |
| KRH53203 | Soybean | cytosol | 50.31 | 48.95 |
| CDY21556 | Canola | cytoskeleton, cytosol, peroxisome | 49.69 | 47.92 |
| CDX69931 | Canola | cytoskeleton, cytosol, peroxisome | 49.69 | 47.92 |
| Bra009358.1-P | Field mustard | cytoskeleton, cytosol, peroxisome | 49.69 | 47.92 |
| VIT_18s0001g03490.t01 | Wine grape | cytosol | 49.38 | 47.76 |
| KRH18787 | Soybean | cytosol | 48.15 | 46.71 |
| Solyc11g013110.1.1 | Tomato | cytosol, plastid | 49.69 | 45.74 |
| PGSC0003DMT400036565 | Potato | cytosol | 49.38 | 45.45 |
| KRH16579 | Soybean | cytosol, mitochondrion | 41.67 | 44.7 |
| Bra018076.1-P | Field mustard | cytosol | 41.36 | 43.93 |
| CDY39565 | Canola | cytosol | 41.05 | 43.61 |
| CDY48154 | Canola | cytosol | 40.74 | 43.28 |
| CDX97750 | Canola | cytosol | 28.4 | 41.63 |
| AT5G63590.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 39.51 | 41.56 |
| CDY69013 | Canola | cytosol | 39.2 | 41.37 |
| Bra038647.1-P | Field mustard | cytosol | 38.27 | 40.39 |
| AT5G43935.1 | Thale cress | cytosol | 36.42 | 40.27 |
| CDY41522 | Canola | cytosol | 36.73 | 40.07 |
| Bra038648.1-P | Field mustard | cytosol | 36.73 | 40.07 |
| Bra037747.1-P | Field mustard | cytosol | 38.58 | 39.81 |
| CDY39860 | Canola | cytosol | 37.35 | 39.16 |
| CDY31361 | Canola | cytosol | 37.35 | 39.03 |
| CDX81188 | Canola | cytosol | 38.27 | 38.75 |
| Bra029211.1-P | Field mustard | cytosol | 37.04 | 38.71 |
| AT5G63595.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 32.41 | 37.63 |
| TraesCS1B01G088600.1 | Wheat | cytoskeleton, cytosol, peroxisome | 40.74 | 36.87 |
| AT5G63600.2 | Thale cress | cytosol | 37.04 | 36.81 |
| CDY41520 | Canola | cytosol | 27.78 | 36.44 |
| TraesCS4B01G195000.1 | Wheat | cytosol | 41.05 | 36.14 |
| AT5G63580.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 27.47 | 35.6 |
| TraesCS5B01G153100.1 | Wheat | cytosol, nucleus, peroxisome | 40.12 | 35.52 |
| TraesCS2B01G613000.1 | Wheat | cytosol, extracellular, peroxisome | 37.96 | 34.17 |
| TraesCS3B01G383900.1 | Wheat | cytosol | 39.2 | 34.05 |
| TraesCS7B01G063700.1 | Wheat | plastid | 34.88 | 33.83 |
| TraesCS2B01G412900.1 | Wheat | plastid | 36.42 | 33.81 |
| TraesCS4B01G346900.1 | Wheat | cytosol | 34.88 | 33.63 |
| TraesCS6B01G317900.1 | Wheat | cytosol | 27.16 | 32.59 |
| TraesCS6B01G318000.1 | Wheat | plastid | 33.95 | 32.35 |
| TraesCS2B01G613300.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 34.57 | 32.09 |
| TraesCS4B01G328300.1 | Wheat | cytosol | 26.54 | 32.09 |
| TraesCS6B01G046800.1 | Wheat | plastid | 34.26 | 32.08 |
| TraesCS2B01G413000.1 | Wheat | cytosol, nucleus, peroxisome | 33.33 | 31.76 |
| TraesCS7B01G020000.1 | Wheat | plastid | 33.64 | 31.5 |
| TraesCS6B01G048100.1 | Wheat | plastid | 31.48 | 30.63 |
| TraesCS3B01G444500.1 | Wheat | cytosol | 32.1 | 30.32 |
| TraesCS6B01G318100.1 | Wheat | plastid | 32.1 | 30.32 |
| TraesCS3B01G479500.1 | Wheat | cytosol | 32.41 | 30.17 |
| TraesCS6B01G047100.1 | Wheat | extracellular, vacuole | 32.41 | 30.17 |
| TraesCS6B01G006200.1 | Wheat | cytosol | 40.43 | 29.77 |
| TraesCS1B01G052600.1 | Wheat | cytosol | 31.79 | 29.77 |
| TraesCS2B01G521500.1 | Wheat | golgi | 33.95 | 29.1 |
| TraesCS3B01G486500.1 | Wheat | cytosol | 31.17 | 28.94 |
| Bra029212.1-P | Field mustard | cytosol | 37.65 | 28.91 |
| CDY31363 | Canola | cytosol | 37.35 | 28.67 |
| CDY41521 | Canola | cytosol, mitochondrion | 1.85 | 28.57 |
| TraesCS7B01G180300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 34.88 | 27.97 |
| TraesCS4B01G003300.1 | Wheat | plastid | 33.33 | 27.91 |
| TraesCS6B01G044600.1 | Wheat | cytosol | 29.32 | 27.3 |
| TraesCS2B01G514200.1 | Wheat | cytosol, nucleus, peroxisome | 26.54 | 26.3 |
| TraesCS2B01G568800.1 | Wheat | cytosol, nucleus, peroxisome | 26.23 | 25.91 |
| TraesCS3B01G351600.1 | Wheat | cytosol | 28.09 | 25.35 |
| TraesCS2B01G568900.1 | Wheat | mitochondrion, plastid | 25.93 | 25.0 |
| VIT_18s0001g03510.t01 | Wine grape | cytosol | 49.69 | 23.68 |
| TraesCS5B01G053400.2 | Wheat | cytosol | 28.09 | 23.04 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G344800.1 | EnsemblPlantsGene:TraesCS4B01G344800 | Gene3D:2.60.120.330 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:DIOX_N | InterPro:IPNS-like | InterPro:IPR005123 |
| InterPro:IPR027443 | InterPro:Oxoglu/Fe-dep_dioxygenase | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF165 | PFAM:PF03171 | PFAM:PF14226 |
| PFscan:PS51471 | SEG:seg | SUPFAM:SSF51197 | MapMan:9.2.2.5.1 | : | : |
Description
No Description!
Coordinates
chr4B:-:638147274..638148327
Molecular Weight (calculated)
35734.6 Da
IEP (calculated)
6.052
GRAVY (calculated)
-0.333
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVVQSVQV LASSLGELPP EFVRPEHERP RATTFRGASP LQIPVVDMSL PDAGCRMVEA ATEWGVFQAV NHGVPADAVA ELQRVGREFF ALPQEEKQRY
101: AMDPASGKTE GYGSSVQRSP GDRKIWSDNL FHTISPPAAV NHGFWPEKPR GYREANEVLE RLSAGLGLEE GAMAEAFGGG DDGLVLMQKV NFYPPCPQPE
201: LVLGFAPHTD LCALTVLVTD DVPGLQVSKD GRWYDVEHVP GALIINVGDQ IEILSNGRYR SVLHRVTVSK EKTRMSWPVF VHPRKDYVVG PHPRLVGGGI
301: PAKYDYKDKT FEDYTYCKIN KLPQ
101: AMDPASGKTE GYGSSVQRSP GDRKIWSDNL FHTISPPAAV NHGFWPEKPR GYREANEVLE RLSAGLGLEE GAMAEAFGGG DDGLVLMQKV NFYPPCPQPE
201: LVLGFAPHTD LCALTVLVTD DVPGLQVSKD GRWYDVEHVP GALIINVGDQ IEILSNGRYR SVLHRVTVSK EKTRMSWPVF VHPRKDYVVG PHPRLVGGGI
301: PAKYDYKDKT FEDYTYCKIN KLPQ
001: MVAVERVESL AKSGIISIPK EYIRPKEELE SINDVFLEEK KEDGPQVPTI DLKNIESDDE KIRENCIEEL KKASLDWGVM HLINHGIPAD LMERVKKAGE
101: EFFSLSVEEK EKYANDQATG KIQGYGSKLA NNASGQLEWE DYFFHLAYPE EKRDLSIWPK TPSDYIEATS EYAKCLRLLA TKVFKALSVG LGLEPDRLEK
201: EVGGLEELLL QMKINYYPKC PQPELALGVE AHTDVSALTF ILHNMVPGLQ LFYEGKWVTA KCVPDSIVMH IGDTLEILSN GKYKSILHRG LVNKEKVRIS
301: WAVFCEPPKD KIVLKPLPEM VSVESPAKFP PRTFAQHIEH KLFGKEQEEL VSEKND
101: EFFSLSVEEK EKYANDQATG KIQGYGSKLA NNASGQLEWE DYFFHLAYPE EKRDLSIWPK TPSDYIEATS EYAKCLRLLA TKVFKALSVG LGLEPDRLEK
201: EVGGLEELLL QMKINYYPKC PQPELALGVE AHTDVSALTF ILHNMVPGLQ LFYEGKWVTA KCVPDSIVMH IGDTLEILSN GKYKSILHRG LVNKEKVRIS
301: WAVFCEPPKD KIVLKPLPEM VSVESPAKFP PRTFAQHIEH KLFGKEQEEL VSEKND
Arabidopsis Description
LDOXAT4G22880 protein [Source:UniProtKB/TrEMBL;Acc:Q0WWD6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.