Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
nucleus: 26228564 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G493500.1 | Wheat | golgi | 98.94 | 99.2 |
| TraesCS2B01G521500.1 | Wheat | golgi | 98.94 | 98.94 |
| HORVU2Hr1G110130.3 | Barley | mitochondrion | 96.03 | 81.76 |
| Zm00001d001960_P001 | Maize | plastid | 78.57 | 81.15 |
| EES13031 | Sorghum | cytosol | 79.89 | 80.75 |
| VIT_18s0001g14310.t01 | Wine grape | cytosol | 72.49 | 76.54 |
| AT3G51240.1 | Thale cress | cytosol | 71.43 | 75.42 |
| GSMUA_Achr2P02770_001 | Banana | cytosol | 73.81 | 75.0 |
| CDX77983 | Canola | cytosol | 70.63 | 74.58 |
| Bra036828.1-P | Field mustard | cytosol | 70.37 | 74.3 |
| CDX73739 | Canola | cytosol | 70.11 | 74.02 |
| PGSC0003DMT400009175 | Potato | cytosol | 70.11 | 73.61 |
| VIT_04s0023g03370.t01 | Wine grape | cytosol | 70.63 | 73.55 |
| Solyc02g083860.2.1 | Tomato | cytosol | 70.37 | 73.48 |
| GSMUA_Achr7P16780_001 | Banana | cytosol | 72.22 | 73.19 |
| CDX90656 | Canola | cytosol | 67.72 | 73.14 |
| CDY29008 | Canola | cytosol | 66.67 | 72.0 |
| Bra012862.1-P | Field mustard | cytosol | 66.14 | 71.43 |
| KXG27349 | Sorghum | plastid | 80.16 | 70.3 |
| KRH69784 | Soybean | cytosol | 69.05 | 69.6 |
| KRH69787 | Soybean | nucleus | 68.78 | 69.15 |
| KRH08080 | Soybean | cytosol | 67.72 | 68.82 |
| KRH76658 | Soybean | cytosol | 66.14 | 68.49 |
| CDX76765 | Canola | cytosol | 36.51 | 57.98 |
| Os04t0662600-00 | Rice | mitochondrion, peroxisome | 59.79 | 55.66 |
| CDX76159 | Canola | cytoskeleton, cytosol, peroxisome | 42.86 | 55.29 |
| Bra014831.1-P | Field mustard | cytosol | 46.83 | 54.97 |
| TraesCS7D01G160100.2 | Wheat | plastid | 32.54 | 36.94 |
| TraesCS6D01G310700.1 | Wheat | plastid | 30.42 | 34.43 |
| TraesCS4D01G341800.1 | Wheat | cytosol | 30.16 | 33.93 |
| TraesCS4D01G339800.1 | Wheat | cytosol, plastid | 30.16 | 33.93 |
| TraesCS2D01G392800.1 | Wheat | cytosol | 29.89 | 33.24 |
| TraesCS7D01G119600.1 | Wheat | plastid | 30.16 | 33.14 |
| TraesCS5D01G159800.1 | Wheat | plastid | 31.75 | 32.79 |
| TraesCS6D01G038900.1 | Wheat | cytosol | 26.72 | 31.46 |
| TraesCS2D01G392900.1 | Wheat | plastid | 32.28 | 31.28 |
| TraesCS3D01G345600.1 | Wheat | cytosol | 31.22 | 31.22 |
| TraesCS1D01G072700.1 | Wheat | cytoskeleton, cytosol, peroxisome | 29.37 | 31.01 |
| TraesCS4D01G195700.1 | Wheat | cytosol | 29.1 | 29.89 |
| TraesCS3D01G405500.1 | Wheat | cytosol | 27.25 | 29.51 |
| TraesCS3D01G411700.1 | Wheat | cytosol | 23.55 | 29.47 |
| TraesCS6D01G038500.1 | Wheat | plastid | 26.72 | 29.19 |
| TraesCS3D01G437500.2 | Wheat | cytosol | 26.72 | 29.02 |
| TraesCS7D01G279500.1 | Wheat | cytosol | 29.1 | 28.8 |
| TraesCS6D01G035200.1 | Wheat | cytosol | 26.45 | 28.74 |
| TraesCS6D01G270600.1 | Wheat | plastid | 25.66 | 28.53 |
| TraesCS2D01G487400.1 | Wheat | cytosol, nucleus, peroxisome | 13.76 | 27.81 |
| TraesCS6D01G270700.1 | Wheat | cytosol, peroxisome, plastid | 24.87 | 27.65 |
| Os08t0480200-01 | Rice | cytosol | 24.6 | 27.6 |
| TraesCS2D01G539600.1 | Wheat | mitochondrion, plastid | 24.34 | 27.06 |
| TraesCS4D01G002800.1 | Wheat | cytosol, plastid | 27.25 | 26.34 |
| TraesCS5D01G058700.2 | Wheat | cytosol | 25.93 | 25.99 |
| TraesCS6D01G270500.1 | Wheat | plastid | 23.55 | 25.95 |
| TraesCS2D01G539400.1 | Wheat | cytosol, nucleus, peroxisome | 21.96 | 25.3 |
| TraesCS6D01G000600.1 | Wheat | mitochondrion | 14.81 | 21.96 |
| TraesCS6D01G004300.1 | Wheat | cytosol | 24.87 | 21.46 |
| TraesCS3D01G316200.1 | Wheat | cytosol | 22.22 | 20.84 |
| Os08t0480100-01 | Rice | cytosol, endoplasmic reticulum, plastid | 0.79 | 0.48 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G493400.1 | EnsemblPlantsGene:TraesCS2D01G493400 | Gene3D:2.60.120.330 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:DIOX_N | InterPro:IPNS-like | InterPro:IPR005123 |
| InterPro:IPR027443 | InterPro:Oxoglu/Fe-dep_dioxygenase | ncoils:Coil | PANTHER:PTHR10209 | PANTHER:PTHR10209:SF137 | PFAM:PF03171 |
| PFAM:PF14226 | PFscan:PS51471 | SEG:seg | SUPFAM:SSF51197 | MapMan:9.2.2.4.3 | : |
Description
No Description!
Coordinates
chr2D:-:590930088..590931647
Molecular Weight (calculated)
42035.2 Da
IEP (calculated)
6.192
GRAVY (calculated)
-0.358
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPVSNETFL PTAAWGEATL RPSFVRDEDE RPKVAHDRFS DAVPVISLDG IDGARRAEIR DRVAAACEGW GIFQVVDHGV DADLIADMTR LSREFFALPA
101: EDKLRYDMSG GKKGGFIVSS HLQGEAVQDW REIVTYFSYP VKARDYGRWP EKPAGWRAVV ERYSERLMGL SCKLLGVLSE AMGLESEALA KACVDMDQKV
201: VVNFYPRCPQ PDLTLGLKRH TDPGTITLLL QDLVGGLQAT RDGGKTWITV QPISGAFVVN LGDHGHFMSN GRFKNADHQA VVNGQSSRLS IATFQNPAPD
301: ARVWPLAVRE GEEPILEEPI TFSEMYRRKM ERDLDLAKRK KQAKDQLMQQ QLQLQQQQQA VAAAPMPTAT KSLNEILA
101: EDKLRYDMSG GKKGGFIVSS HLQGEAVQDW REIVTYFSYP VKARDYGRWP EKPAGWRAVV ERYSERLMGL SCKLLGVLSE AMGLESEALA KACVDMDQKV
201: VVNFYPRCPQ PDLTLGLKRH TDPGTITLLL QDLVGGLQAT RDGGKTWITV QPISGAFVVN LGDHGHFMSN GRFKNADHQA VVNGQSSRLS IATFQNPAPD
301: ARVWPLAVRE GEEPILEEPI TFSEMYRRKM ERDLDLAKRK KQAKDQLMQQ QLQLQQQQQA VAAAPMPTAT KSLNEILA
001: MAPGTLTELA GESKLNSKFV RDEDERPKVA YNVFSDEIPV ISLAGIDDVD GKRGEICRQI VEACENWGIF QVVDHGVDTN LVADMTRLAR DFFALPPEDK
101: LRFDMSGGKK GGFIVSSHLQ GEAVQDWREI VTYFSYPVRN RDYSRWPDKP EGWVKVTEEY SERLMSLACK LLEVLSEAMG LEKESLTNAC VDMDQKIVVN
201: YYPKCPQPDL TLGLKRHTDP GTITLLLQDQ VGGLQATRDN GKTWITVQPV EGAFVVNLGD HGHFLSNGRF KNADHQAVVN SNSSRLSIAT FQNPAPDATV
301: YPLKVREGEK AILEEPITFA EMYKRKMGRD LELARLKKLA KEERDHKEVD KPVDQIFA
101: LRFDMSGGKK GGFIVSSHLQ GEAVQDWREI VTYFSYPVRN RDYSRWPDKP EGWVKVTEEY SERLMSLACK LLEVLSEAMG LEKESLTNAC VDMDQKIVVN
201: YYPKCPQPDL TLGLKRHTDP GTITLLLQDQ VGGLQATRDN GKTWITVQPV EGAFVVNLGD HGHFLSNGRF KNADHQAVVN SNSSRLSIAT FQNPAPDATV
301: YPLKVREGEK AILEEPITFA EMYKRKMGRD LELARLKKLA KEERDHKEVD KPVDQIFA
Arabidopsis Description
F3HNaringenin,2-oxoglutarate 3-dioxygenase [Source:UniProtKB/Swiss-Prot;Acc:Q9S818]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.