CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
plastid 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16579
KRH18787
KRH53203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51240.1	KRH16579	AT5G08640.1	18467451
AT3G51240.1	KRH18787	AT5G08640.1	18467451
AT3G51240.1	KRH53203	AT5G08640.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69784	Soybean	cytosol	96.28	96.53
KRH08080	Soybean	cytosol	84.04	84.95
CDX77983	Canola	cytosol	78.99	82.96
Bra036828.1-P	Field mustard	cytosol	78.72	82.68
CDX73739	Canola	cytosol	78.46	82.4
AT3G51240.1	Thale cress	cytosol	77.93	81.84
CDX90656	Canola	cytosol	74.73	80.29
CDY29008	Canola	cytosol	73.94	79.43
KRH76658	Soybean	cytosol	76.6	78.9
Bra012862.1-P	Field mustard	cytosol	73.4	78.86
GSMUA_Achr2P02770_001	Banana	cytosol	75.27	76.08
GSMUA_Achr7P16780_001	Banana	cytosol	74.73	75.34
Zm00001d001960_P001	Maize	plastid	68.35	70.22
EES13031	Sorghum	cytosol	69.41	69.79
TraesCS2B01G613300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	64.36	69.34
TraesCS2B01G521500.1	Wheat	golgi	69.68	69.31
TraesCS2A01G493500.1	Wheat	golgi	69.41	69.23
TraesCS2D01G493400.1	Wheat	golgi, nucleus	69.15	68.78
KXG27349	Sorghum	plastid	70.21	61.25
CDX76765	Canola	cytosol	38.3	60.5
Bra014831.1-P	Field mustard	cytosol	51.6	60.25
CDX76159	Canola	cytoskeleton, cytosol, peroxisome	46.01	59.04
HORVU2Hr1G110130.3	Barley	mitochondrion	68.62	58.11
Os04t0662600-00	Rice	mitochondrion, peroxisome	55.85	51.72
KRH38051	Soybean	cytosol, peroxisome	20.48	39.69
KRH53636	Soybean	cytosol	33.78	37.57
KRH64291	Soybean	cytosol	33.24	36.98
KRH06343	Soybean	cytosol	33.78	36.81
KRH47765	Soybean	cytosol	33.51	36.52
KRH68971	Soybean	cytosol	32.71	35.24
KRG93692	Soybean	cytosol, nucleus, peroxisome	30.05	33.53
KRH14938	Soybean	cytosol	32.18	33.52
KRH18340	Soybean	cytosol	29.52	32.94
KRH74519	Soybean	cytosol	30.32	32.57
KRH65721	Soybean	cytosol	31.91	32.17
KRG98061	Soybean	mitochondrion, plastid	29.79	31.91
KRH53203	Soybean	cytosol	27.93	31.53
KRH73197	Soybean	cytosol	31.65	31.48
KRH57850	Soybean	cytosol	27.66	31.42
KRH30715	Soybean	cytosol	30.59	31.34
KRH00254	Soybean	plastid	28.99	31.32
KRG97722	Soybean	cytosol	30.05	31.3
KRH77456	Soybean	cytosol	29.26	31.25
KRH27988	Soybean	cytosol	29.26	31.25
KRH32174	Soybean	cytosol	27.93	30.79
KRH49391	Soybean	cytosol	31.12	30.63
KRH31155	Soybean	cytosol	28.99	30.19
KRH67790	Soybean	cytosol	28.72	29.51
KRH32602	Soybean	cytosol	29.52	29.06
KRH18787	Soybean	cytosol	25.8	29.04
KRH01377	Soybean	cytosol, plastid	26.06	28.99
KRH19976	Soybean	cytosol	29.26	28.87
KRH72414	Soybean	cytosol	26.06	28.82
KRH40180	Soybean	plastid	26.6	28.41
KRG96078	Soybean	cytosol	28.19	28.27
KRH16579	Soybean	cytosol, mitochondrion	22.61	28.15
KRH07794	Soybean	cytosol	23.4	27.94
KRH16797	Soybean	cytosol	25.0	27.65
KRH69638	Soybean	cytosol, nucleus, peroxisome, plastid	17.02	27.35
Os08t0480200-01	Rice	cytosol	24.47	27.3
KRH53489	Soybean	cytosol	26.06	27.07
KRH16798	Soybean	cytosol	24.47	27.06
KRH76176	Soybean	cytosol	21.81	26.37
KRH45093	Soybean	cytosol, mitochondrion, nucleus, peroxisome	22.61	25.99
KRH49802	Soybean	cytosol	14.1	25.48
KRH42116	Soybean	plastid	23.67	24.52
KRH18071	Soybean	cytosol	21.28	22.79
Os08t0480100-01	Rice	cytosol, endoplasmic reticulum, plastid	0.8	0.48

Protein Annotations

EntrezGene:100780057	Gene3D:2.60.120.330	MapMan:9.2.2.4.3	ProteinID:AAU06218.1	EMBL:ACUP02000729	ncoils:Coil
InterPro:DIOX_N	EnsemblPlantsGene:GLYMA_02G048600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009813	GO:GO:0016491
GO:GO:0045486	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
EnsemblPlants:KRH69787	ProteinID:KRH69787	ProteinID:KRH69787.1	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF137	UniProt:Q3T7D5	SUPFAM:SSF51197	UniParc:UPI00005AD3E4

Description

hypothetical protein

Coordinates

chr2:-:4449030..4451814

Molecular Weight (calculated)

42829.2 Da

IEP (calculated)

6.039

GRAVY (calculated)

-0.550

Length

376 amino acids

Sequence
(BLAST)

001: MAPAAAKTLT YLAQQKTLES SFVRDEEERP KVAYNEFSDE IPVISLAGID EVDGRRREIC EKIVEACENW GIFQVVDHGV DQQLVAEMTR LAKEFFALPP
101: DEKLRFDMSG AKKGGFIVSS HLQGESVQDW REIVIYFSYP KRERDYSRWP HKPEGWRWAT EEYSEKLMGL AGKLMEVLSE AMGLEKEGLS KACVDMDQKV
201: VVNYYPKCPQ PDLTLGLKRH TDPGTITLLL QDQVGGLQAT RDNGKTWITV QPVEAAFVVN LGDHAHYLTN GRFKNADHQA VVNSNHSRLS IATFQNPAPN
301: ATVYPLKIRE GEKPVMEEPI TFAEMYRRKM SKDLEIARMK KLAKENHLQD LENEKHLQEL DQKAKLEAKP LKEILA

Best Arabidopsis Sequence Match ( AT3G51240.1 )
(BLAST)

001: MAPGTLTELA GESKLNSKFV RDEDERPKVA YNVFSDEIPV ISLAGIDDVD GKRGEICRQI VEACENWGIF QVVDHGVDTN LVADMTRLAR DFFALPPEDK
101: LRFDMSGGKK GGFIVSSHLQ GEAVQDWREI VTYFSYPVRN RDYSRWPDKP EGWVKVTEEY SERLMSLACK LLEVLSEAMG LEKESLTNAC VDMDQKIVVN
201: YYPKCPQPDL TLGLKRHTDP GTITLLLQDQ VGGLQATRDN GKTWITVQPV EGAFVVNLGD HGHFLSNGRF KNADHQAVVN SNSSRLSIAT FQNPAPDATV
301: YPLKVREGEK AILEEPITFA EMYKRKMGRD LELARLKKLA KEERDHKEVD KPVDQIFA

Arabidopsis Description

F3HNaringenin,2-oxoglutarate 3-dioxygenase [Source:UniProtKB/Swiss-Prot;Acc:Q9S818]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.