Factsheet for Zm00001d001960_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

peroxisome 1
mitochondrion 1
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018181_P001
Zm00001d018184_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51240.1	Zm00001d018181_P001	AT5G08640.1	18467451
AT3G51240.1	Zm00001d018184_P001	AT5G08640.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13031	Sorghum	cytosol	92.62	90.64
TraesCS2B01G613300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	77.32	81.09
TraesCS2B01G521500.1	Wheat	golgi	82.24	79.63
TraesCS2A01G493500.1	Wheat	golgi	81.69	79.31
KXG27349	Sorghum	plastid	93.17	79.12
TraesCS2D01G493400.1	Wheat	golgi, nucleus	81.15	78.57
AT3G51240.1	Thale cress	cytosol	75.14	76.82
CDX77983	Canola	cytosol	74.86	76.54
Bra036828.1-P	Field mustard	cytosol	74.59	76.26
VIT_18s0001g14310.t01	Wine grape	cytosol	74.59	76.26
CDX73739	Canola	cytosol	74.04	75.7
VIT_04s0023g03370.t01	Wine grape	cytosol	74.59	75.21
CDX90656	Canola	cytosol	71.31	74.57
GSMUA_Achr2P02770_001	Banana	cytosol	75.68	74.46
PGSC0003DMT400009175	Potato	cytosol	72.95	74.17
Solyc02g083860.2.1	Tomato	cytosol	73.22	74.03
CDY29008	Canola	cytosol	70.49	73.71
GSMUA_Achr7P16780_001	Banana	cytosol	74.86	73.46
Bra012862.1-P	Field mustard	cytosol	69.95	73.14
KRH69784	Soybean	cytosol	71.31	69.6
KRH76658	Soybean	cytosol	68.85	69.04
KRH69787	Soybean	nucleus	70.22	68.35
KRH08080	Soybean	cytosol	69.4	68.28
HORVU2Hr1G110130.3	Barley	mitochondrion	80.87	66.67
CDX76765	Canola	cytosol	38.25	58.82
Bra014831.1-P	Field mustard	cytosol	48.91	55.59
Os04t0662600-00	Rice	mitochondrion, peroxisome	60.66	54.68
CDX76159	Canola	cytoskeleton, cytosol, peroxisome	43.44	54.27
Zm00001d029744_P001	Maize	cytosol	32.79	35.71
Zm00001d002564_P001	Maize	cytosol, peroxisome, plastid	34.15	35.61
Zm00001d027423_P002	Maize	cytosol, nucleus, peroxisome	35.25	34.96
Zm00001d042980_P002	Maize	cytosol	33.61	32.89
Zm00001d018181_P001	Maize	endoplasmic reticulum, nucleus	28.14	32.7
Zm00001d018184_P001	Maize	endoplasmic reticulum	28.14	32.7
Zm00001d035308_P001	Maize	extracellular	29.51	31.49
Zm00001d035462_P001	Maize	cytosol	32.79	31.41
Zm00001d045233_P002	Maize	plastid	31.97	30.08
Zm00001d028744_P001	Maize	cytosol	30.6	29.79
Zm00001d041726_P001	Maize	plastid	27.32	28.9
Zm00001d020163_P001	Maize	cytosol	21.04	28.84
Zm00001d001927_P001	Maize	cytosol	25.68	28.75
Zm00001d038073_P001	Maize	cytosol	16.67	28.11
Zm00001d051896_P001	Maize	cytosol	26.78	28.0
Zm00001d049926_P001	Maize	cytosol	30.6	27.79
Zm00001d012456_P004	Maize	plastid	35.79	27.75
Os08t0480200-01	Rice	cytosol	25.41	27.6
Zm00001d048800_P001	Maize	cytosol	14.75	27.55
Zm00001d047744_P001	Maize	mitochondrion	29.78	26.78
Zm00001d014914_P001	Maize	cytosol	28.42	26.33
Zm00001d052999_P001	Maize	cytosol	31.69	26.19
Zm00001d031926_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.42	26.14
Zm00001d001924_P001	Maize	plastid	23.5	23.76
Os08t0480100-01	Rice	cytosol, endoplasmic reticulum, plastid	0.27	0.16
Zm00001d042655_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.120.330	EntrezGene:542712	MapMan:9.2.2.4.3	UniProt:B4F8K3	EMBL:BT033441	EMBL:BT040458
EMBL:BT040568	EMBL:BT067660	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	ProteinID:ONM12564.1	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF137	SUPFAM:SSF51197	UniParc:UPI00017B602E
EnsemblPlantsGene:Zm00001d001960	EnsemblPlants:Zm00001d001960_P001	EnsemblPlants:Zm00001d001960_T001	SEG:seg	:	:

Description

flavanone 3-hydroxylase1Naringenin2-oxoglutarate 3-dioxygenase

Coordinates

chr2:+:3559183..3560951

Molecular Weight (calculated)

40408.3 Da

IEP (calculated)

6.122

GRAVY (calculated)

-0.218

Length

366 amino acids

Sequence
(BLAST)

001: MAPVSISAVP FLPTAAEGET KLRASFVREE DERPKVPHDR FSDEVPVVSL EGIDGARRAE IRARVAAACE DWGIFQVVDH GVDAALVADM ARLARDFFAL
101: PPEDKLRFDM SGGKKGGFIV SSHLQGEAVQ DWREIVTYFS YPVKARDYSR WPDKPAAWRA VVERYSEQLM ALACRLLGVL SEAMGLDTEA LARACVDMDQ
201: KVVVNFYPRC PQPDLTLGLK RHTDPGTITL LLQDLVGGLQ ATRDGGRTWI TVQPVEGAFV VNLGDHGHLL SNGRFKNADH QAVVNSECSR LSIATFQNPA
301: PDATVYPLAV RDGEAPILDH PITFAEMYRR KMARDIELAR LKKQVKADKS ANKEFADSKP LDAILA

Best Arabidopsis Sequence Match ( AT3G51240.1 )
(BLAST)

001: MAPGTLTELA GESKLNSKFV RDEDERPKVA YNVFSDEIPV ISLAGIDDVD GKRGEICRQI VEACENWGIF QVVDHGVDTN LVADMTRLAR DFFALPPEDK
101: LRFDMSGGKK GGFIVSSHLQ GEAVQDWREI VTYFSYPVRN RDYSRWPDKP EGWVKVTEEY SERLMSLACK LLEVLSEAMG LEKESLTNAC VDMDQKIVVN
201: YYPKCPQPDL TLGLKRHTDP GTITLLLQDQ VGGLQATRDN GKTWITVQPV EGAFVVNLGD HGHFLSNGRF KNADHQAVVN SNSSRLSIAT FQNPAPDATV
301: YPLKVREGEK AILEEPITFA EMYKRKMGRD LELARLKKLA KEERDHKEVD KPVDQIFA

Arabidopsis Description

F3HNaringenin,2-oxoglutarate 3-dioxygenase [Source:UniProtKB/Swiss-Prot;Acc:Q9S818]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.