Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH49802 | Soybean | cytosol | 5.31 | 2.88 |
| TraesCS3D01G316200.1 | Wheat | cytosol | 7.96 | 2.23 |
| HORVU3Hr1G077080.2 | Barley | cytosol, peroxisome, plastid | 7.08 | 2.23 |
| TraesCS3A01G315300.1 | Wheat | cytosol, peroxisome, plastid | 7.08 | 2.23 |
| TraesCS3B01G351600.1 | Wheat | cytosol | 7.08 | 2.23 |
| TraesCS5A01G048400.1 | Wheat | cytosol | 6.19 | 2.06 |
| Solyc01g105650.2.1 | Tomato | cytosol | 6.19 | 1.97 |
| HORVU5Hr1G011540.3 | Barley | cytosol | 6.19 | 1.83 |
| OQU80974 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 5.31 | 1.57 |
| VIT_18s0001g06690.t01 | Wine grape | cytosol | 4.42 | 1.49 |
| KRH42116 | Soybean | plastid | 4.42 | 1.38 |
| TraesCS5D01G058700.2 | Wheat | cytosol | 4.42 | 1.33 |
| TraesCS5B01G053400.2 | Wheat | cytosol | 4.42 | 1.27 |
| GSMUA_Achr9P15020_001 | Banana | cytosol | 3.54 | 1.14 |
| Zm00001d012456_P004 | Maize | plastid | 4.42 | 1.06 |
| Zm00001d048800_P001 | Maize | cytosol | 1.77 | 1.02 |
| Zm00001d047744_P001 | Maize | mitochondrion | 3.54 | 0.98 |
| Zm00001d038073_P001 | Maize | cytosol | 1.77 | 0.92 |
| Zm00001d051896_P001 | Maize | cytosol | 2.65 | 0.86 |
| Zm00001d001924_P001 | Maize | plastid | 2.65 | 0.83 |
| Zm00001d028744_P001 | Maize | cytosol | 2.65 | 0.8 |
| Zm00001d049926_P001 | Maize | cytosol | 2.65 | 0.74 |
| Zm00001d031926_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 2.65 | 0.68 |
| Zm00001d001927_P001 | Maize | cytosol | 1.77 | 0.61 |
| Zm00001d035308_P001 | Maize | extracellular | 1.77 | 0.58 |
| Zm00001d041726_P001 | Maize | plastid | 1.77 | 0.58 |
| Zm00001d002564_P001 | Maize | cytosol, peroxisome, plastid | 1.77 | 0.57 |
| Zm00001d042980_P002 | Maize | cytosol | 1.77 | 0.53 |
| Zm00001d045233_P002 | Maize | plastid | 1.77 | 0.51 |
| Zm00001d014914_P001 | Maize | cytosol | 1.77 | 0.51 |
| Zm00001d052999_P001 | Maize | cytosol | 1.77 | 0.45 |
| Zm00001d020163_P001 | Maize | cytosol | 0.88 | 0.37 |
| Zm00001d018184_P001 | Maize | endoplasmic reticulum | 0.88 | 0.32 |
| Zm00001d018181_P001 | Maize | endoplasmic reticulum, nucleus | 0.88 | 0.32 |
| Zm00001d029744_P001 | Maize | cytosol | 0.88 | 0.3 |
| Zm00001d027423_P002 | Maize | cytosol, nucleus, peroxisome | 0.88 | 0.27 |
| Zm00001d035462_P001 | Maize | cytosol | 0.88 | 0.26 |
| PGSC0003DMT400083728 | Potato | cytosol | 0.0 | 0.0 |
| Zm00001d001960_P001 | Maize | plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:23.3.1.2.1 | Gene3D:3.40.50.300 | UniProt:A0A1D6N5T9 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006614 | GO:GO:0006810 |
| GO:GO:0008150 | ProteinID:ONM35987.1 | InterPro:P-loop_NTPase | PFAM:PF00448 | ScanProsite:PS00300 | PANTHER:PTHR43134 |
| PANTHER:PTHR43134:SF4 | SMART:SM00962 | InterPro:SRP54_GTPase_dom | SUPFAM:SSF52540 | UniParc:UPI0002213136 | EnsemblPlantsGene:Zm00001d042655 |
| EnsemblPlants:Zm00001d042655_P001 | EnsemblPlants:Zm00001d042655_T001 | : | : | : | : |
Description
signal recognition particle receptor alpha subunit family protein
Coordinates
chr3:+:175565691..175566561
Molecular Weight (calculated)
12212.1 Da
IEP (calculated)
6.631
GRAVY (calculated)
0.288
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDNEPLMRA LSKLINLNSP DLVLFVGEAL VGNDAVDQLT KFNQKLADLS AVPTARLIDG ILLTKFDTID DKVGAALSMV YISGAPVMFV GCGQSYTDLK
101: KLNVKSIVKT LLK
101: KLNVKSIVKT LLK
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
Arabidopsis Description
AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.