Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G527700.2 | Wheat | cytosol | 83.05 | 99.75 |
| TraesCS2B01G558400.1 | Wheat | cytosol | 83.05 | 99.75 |
| HORVU2Hr1G116390.2 | Barley | cytosol | 82.43 | 99.0 |
| TraesCS2D01G027700.1 | Wheat | cytosol | 80.96 | 98.22 |
| TraesCS2D01G027900.2 | Wheat | cytosol | 80.54 | 97.72 |
| TraesCS2D01G034500.1 | Wheat | cytosol | 80.54 | 97.47 |
| TraesCS2D01G027800.1 | Wheat | cytosol | 41.84 | 94.79 |
| GSMUA_Achr6P16370_001 | Banana | cytosol, mitochondrion, plastid | 57.32 | 87.54 |
| GSMUA_Achr6P10910_001 | Banana | cytosol, mitochondrion | 58.58 | 85.37 |
| KRH42776 | Soybean | cytosol | 45.4 | 85.1 |
| VIT_14s0068g00930.t01 | Wine grape | cytosol | 69.87 | 84.99 |
| VIT_14s0068g00920.t01 | Wine grape | cytosol | 69.46 | 84.48 |
| Solyc09g091510.2.1 | Tomato | cytosol, extracellular | 68.62 | 84.32 |
| PGSC0003DMT400076178 | Potato | cytosol | 68.41 | 84.06 |
| Solyc05g053550.2.1 | Tomato | cytosol, mitochondrion | 67.99 | 83.55 |
| TraesCS5D01G488600.1 | Wheat | cytosol | 69.04 | 83.54 |
| TraesCS5D01G488700.1 | Wheat | cytosol | 69.04 | 83.54 |
| KRH42759 | Soybean | cytosol | 67.78 | 83.51 |
| GSMUA_Achr10P... | Banana | cytosol | 56.49 | 83.33 |
| CDX78547 | Canola | cytosol | 68.62 | 83.25 |
| KRH58872 | Soybean | cytosol | 67.57 | 83.25 |
| KRH42783 | Soybean | cytosol | 67.57 | 83.25 |
| KRH42758 | Soybean | cytosol | 67.57 | 83.25 |
| KRH42780 | Soybean | cytosol | 67.57 | 83.25 |
| KRH42775 | Soybean | cytosol | 67.57 | 83.25 |
| KRH42778 | Soybean | cytosol | 67.57 | 83.25 |
| CDX91090 | Canola | cytosol | 68.83 | 83.08 |
| CDX69618 | Canola | cytosol | 68.62 | 83.04 |
| PGSC0003DMT400049165 | Potato | cytosol, mitochondrion | 67.57 | 83.03 |
| VIT_05s0136g00260.t01 | Wine grape | cytosol | 67.57 | 83.03 |
| KRH42757 | Soybean | cytosol | 67.36 | 82.99 |
| KRH75544 | Soybean | cytosol | 67.36 | 82.99 |
| CDX70528 | Canola | cytosol | 68.62 | 82.83 |
| KRH42760 | Soybean | cytosol | 67.15 | 82.73 |
| KRH37579 | Soybean | cytosol | 67.15 | 82.73 |
| Bra008792.1-P | Field mustard | cytosol | 68.2 | 82.53 |
| CDY09836 | Canola | cytosol | 68.2 | 82.53 |
| KRH71115 | Soybean | cytosol | 66.95 | 82.47 |
| KRG94730 | Soybean | cytosol | 67.15 | 82.1 |
| Bra006224.1-P | Field mustard | cytosol | 67.99 | 82.07 |
| AT5G13930.1 | Thale cress | cytosol | 67.78 | 82.03 |
| Bra023441.1-P | Field mustard | cytosol | 67.57 | 81.98 |
| KRH77699 | Soybean | endoplasmic reticulum | 65.48 | 80.46 |
| KRH27737 | Soybean | cytosol | 65.06 | 79.95 |
| TraesCS1D01G033800.1 | Wheat | cytosol | 66.11 | 79.4 |
| TraesCS1D01G033600.1 | Wheat | cytosol | 66.11 | 79.2 |
| CDY51056 | Canola | cytosol | 64.64 | 78.43 |
| Bra036307.1-P | Field mustard | cytosol | 64.44 | 78.37 |
| Bra020688.1-P | Field mustard | cytosol | 64.23 | 77.92 |
| CDY05664 | Canola | cytosol | 64.02 | 77.67 |
| PGSC0003DMT400076179 | Potato | cytosol | 61.3 | 77.31 |
| CDY07114 | Canola | cytosol | 63.81 | 74.39 |
| GSMUA_Achr10P... | Banana | mitochondrion | 52.72 | 73.47 |
| CDY05666 | Canola | mitochondrion | 57.32 | 65.55 |
| TraesCS6D01G197900.1 | Wheat | cytosol | 32.43 | 53.45 |
| TraesCS6D01G278200.1 | Wheat | cytosol | 42.05 | 50.12 |
| TraesCS1D01G359600.1 | Wheat | cytosol | 41.21 | 50.0 |
| TraesCS2D01G022700.1 | Wheat | cytosol, mitochondrion, plastid | 41.21 | 49.25 |
| TraesCS3D01G500500.1 | Wheat | cytosol | 39.75 | 47.38 |
| TraesCS7D01G046500.1 | Wheat | unclear | 39.12 | 47.34 |
| TraesCS2D01G051300.1 | Wheat | cytosol | 39.54 | 47.13 |
| TraesCS2D01G016200.1 | Wheat | cytosol | 38.7 | 46.37 |
| TraesCS7D01G047000.1 | Wheat | cytosol, plastid | 38.28 | 45.98 |
| TraesCS2D01G016100.1 | Wheat | cytosol | 37.87 | 45.94 |
| TraesCS2D01G030600.1 | Wheat | mitochondrion | 36.82 | 45.6 |
| TraesCS7D01G046700.1 | Wheat | cytosol, mitochondrion | 37.66 | 45.57 |
| TraesCS4D01G351300.1 | Wheat | mitochondrion | 37.45 | 44.97 |
| TraesCS7D01G089300.1 | Wheat | mitochondrion | 37.03 | 44.58 |
| TraesCS6D01G018500.1 | Wheat | plastid | 38.08 | 41.55 |
| TraesCS1D01G157500.1 | Wheat | cytosol | 30.13 | 36.92 |
| TraesCS5D01G003600.1 | Wheat | cytosol | 30.54 | 34.68 |
Protein Annotations
| KEGG:00941+2.3.1.74 | Gene3D:3.40.47.10 | MapMan:9.2.2.1.1.1 | InterPro:Chalcone/stilbene_synth_C | InterPro:Chalcone/stilbene_synthase_AS | InterPro:Chalcone/stilbene_synthase_N |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016740 |
| GO:GO:0016746 | GO:GO:0016747 | InterPro:IPR016039 | PFAM:PF00195 | PFAM:PF02797 | ScanProsite:PS00441 |
| PANTHER:PTHR11877 | PANTHER:PTHR11877:SF44 | InterPro:Polyketide_synthase_type-III | SUPFAM:SSF53901 | InterPro:Thiolase-like | EnsemblPlantsGene:TraesCS2D01G530600 |
| EnsemblPlants:TraesCS2D01G530600.1 | TIGR:cd00831 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2D:+:617051125..617053686
Molecular Weight (calculated)
52045.8 Da
IEP (calculated)
6.831
GRAVY (calculated)
-0.097
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLTPFSQRP AFPYLPTLPA YISRRPYSWH HTTPVQAAPV ICLPPASCFP LRPANLDVTQ PATGATTPSS SAAGTYVDPS MAATMTVEEV RKAQRAEGPA
101: TVLAIGTATP ANCVYQADYP DYYFKITKSD HMADLKEKFK RMCDKSQIRK RYMHLTEEIL QENPNMCAYM APSLDARQDI VVVEVPKLGK AAAQKAIKEW
201: GQPRSKITHL VFCTTSGVDM PGADYQLTKM LGLRPSVKRL MMYQQGCFAG GTVLRLAKDL AENNRGARVL VVCSEITAVT FRGPHESHLD SLVGQALFGD
301: GAAAVIIGAD PDVSVERPLF QLVSASQTIL PDSEGAIDGH LREVGLTFHL LKDVPGLISK NIERALEEAF KPLGIDDWNS VFWIAHPGGP AILDMVEAKV
401: NLNKERMRAT RHVLSEYGNM SSACVLFIMD EMRKRSAEDG HATTGEGMDW GVLFGFGPGL TVETVVLHSV PITAGATA
101: TVLAIGTATP ANCVYQADYP DYYFKITKSD HMADLKEKFK RMCDKSQIRK RYMHLTEEIL QENPNMCAYM APSLDARQDI VVVEVPKLGK AAAQKAIKEW
201: GQPRSKITHL VFCTTSGVDM PGADYQLTKM LGLRPSVKRL MMYQQGCFAG GTVLRLAKDL AENNRGARVL VVCSEITAVT FRGPHESHLD SLVGQALFGD
301: GAAAVIIGAD PDVSVERPLF QLVSASQTIL PDSEGAIDGH LREVGLTFHL LKDVPGLISK NIERALEEAF KPLGIDDWNS VFWIAHPGGP AILDMVEAKV
401: NLNKERMRAT RHVLSEYGNM SSACVLFIMD EMRKRSAEDG HATTGEGMDW GVLFGFGPGL TVETVVLHSV PITAGATA
001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL
Arabidopsis Description
CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.