Factsheet for GSMUA_Achr10P12260_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P02770_001
GSMUA_Achr3P07030_001
GSMUA_Achr4P16830_001
GSMUA_Achr4P24540_001
GSMUA_Achr7P16780_001
GSMUA_Achr8P23330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	GSMUA_Achr2P02770_001	AT3G51240.1	10536025
AT5G13930.1	GSMUA_Achr7P16780_001	AT3G51240.1	10536025
AT5G13930.1	GSMUA_Achr4P16830_001	AT3G55120.1	10536025
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr3P07030_001	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr8P23330_001	AT5G08640.1	18467451
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr10P...	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr3P07030_001	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr8P23330_001	AT5G08640.1	21669202
AT5G13930.1	GSMUA_Achr4P24540_001	AT5G42800.1	10536025
AT5G13930.1	GSMUA_Achr4P24540_001	AT5G42800.1	21669202
AT5G13930.1	GSMUA_Achr10P...	AT5G63590.1	18467451
AT5G13930.1	GSMUA_Achr10P...	AT5G63590.1	18467451
AT5G13930.1	GSMUA_Achr3P07030_001	AT5G63590.1	18467451
AT5G13930.1	GSMUA_Achr8P23330_001	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	84.55	89.51
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	76.38	79.88
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	70.85	77.64
TraesCS2D01G027800.1	Wheat	cytosol	40.52	65.88
VIT_14s0068g00920.t01	Wine grape	cytosol	74.64	65.14
Os11t0530600-01	Rice	cytosol, mitochondrion, plasma membrane	74.93	64.57
Zm00001d052673_P001	Maize	cytosol	75.22	64.5
EES08604	Sorghum	cytosol	75.22	64.34
EES09858	Sorghum	cytosol	75.22	64.34
EES09859	Sorghum	cytosol	75.22	64.34
EES09860	Sorghum	cytosol	75.22	64.34
KXG29016	Sorghum	cytosol	75.22	64.34
VIT_14s0068g00930.t01	Wine grape	cytosol	73.47	64.12
EES09863	Sorghum	cytosol	74.93	64.09
EES09865	Sorghum	cytosol	74.93	64.09
PGSC0003DMT400076178	Potato	cytosol	72.59	64.01
Solyc09g091510.2.1	Tomato	cytosol, extracellular	72.59	64.01
EES09864	Sorghum	cytosol	74.64	64.0
EES09862	Sorghum	cytosol	74.64	63.84
Zm00001d007403_P001	Maize	cytosol	74.64	63.84
TraesCS2A01G035300.1	Wheat	cytosol	73.18	63.71
TraesCS2B01G558400.1	Wheat	cytosol	73.76	63.57
CDX78547	Canola	cytosol	72.89	63.45
TraesCS2A01G025600.1	Wheat	cytosol	72.89	63.45
TraesCS2D01G027700.1	Wheat	cytosol	72.89	63.45
HORVU2Hr1G116390.2	Barley	cytosol	73.47	63.32
TraesCS2A01G527700.2	Wheat	cytosol	73.47	63.32
KRH27737	Soybean	cytosol	71.72	63.24
KRH77699	Soybean	endoplasmic reticulum	71.72	63.24
VIT_05s0136g00260.t01	Wine grape	cytosol	71.72	63.24
TraesCS2A01G025500.1	Wheat	cytosol	72.59	63.2
TraesCS2A01G025700.1	Wheat	cytosol, golgi	72.59	63.2
TraesCS2B01G038700.1	Wheat	cytosol	72.59	63.2
TraesCS2D01G027900.2	Wheat	cytosol	72.59	63.2
CDX70528	Canola	cytosol	72.89	63.13
CDX69618	Canola	cytosol	72.59	63.04
HORVU2Hr1G005220.3	Barley	cytosol	72.59	63.04
TraesCS2D01G034500.1	Wheat	cytosol	72.59	63.04
TraesCS2B01G048400.1	Wheat	cytosol	72.3	62.94
KRH42758	Soybean	cytosol	71.14	62.89
KRH42759	Soybean	cytosol	71.14	62.89
KRH42775	Soybean	cytosol	71.14	62.89
KRH42783	Soybean	cytosol	71.14	62.89
KRH58872	Soybean	cytosol	71.14	62.89
AT5G13930.1	Thale cress	cytosol	72.3	62.78
KRH42757	Soybean	cytosol	70.85	62.63
KRH42760	Soybean	cytosol	70.85	62.63
KRH42778	Soybean	cytosol	70.85	62.63
KRH42780	Soybean	cytosol	70.85	62.63
KRH75544	Soybean	cytosol	70.85	62.63
Bra006224.1-P	Field mustard	cytosol	72.3	62.63
Bra008792.1-P	Field mustard	cytosol	72.01	62.53
CDY09836	Canola	cytosol	72.01	62.53
KRG94730	Soybean	cytosol	71.14	62.4
CDX91090	Canola	cytosol	72.01	62.37
KRH37579	Soybean	cytosol	70.55	62.37
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	70.55	62.21
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	70.55	62.21
KRH71115	Soybean	cytosol	70.26	62.11
Bra023441.1-P	Field mustard	cytosol	71.14	61.93
TraesCS2B01G613100.1	Wheat	cytosol	72.01	61.9
TraesCS5D01G488600.1	Wheat	cytosol	71.14	61.77
TraesCS5D01G488700.1	Wheat	cytosol	71.14	61.77
Bra036307.1-P	Field mustard	cytosol	69.68	60.81
CDY05664	Canola	cytosol	69.68	60.66
CDY51056	Canola	cytosol	69.68	60.66
EES14634	Sorghum	cytosol	70.26	60.55
TraesCS2B01G038600.1	Wheat	cytosol	63.85	60.5
Bra020688.1-P	Field mustard	cytosol	69.39	60.41
TraesCS1A01G032100.1	Wheat	cytosol	68.51	59.49
TraesCS1B01G040300.1	Wheat	cytosol, mitochondrion	68.51	59.49
TraesCS1B01G041000.1	Wheat	cytosol	68.51	59.49
GSMUA_Achr6P08170_001	Banana	cytosol	63.56	59.24
TraesCS1B01G040100.1	Wheat	cytosol	67.93	58.99
PGSC0003DMT400076179	Potato	cytosol	65.01	58.84
Os07t0214900-00	Rice	cytosol	69.1	58.81
TraesCS1A01G032300.1	Wheat	cytosol	68.22	58.79
TraesCS1B01G040000.1	Wheat	cytosol, mitochondrion	67.64	58.73
TraesCS1B01G040500.1	Wheat	cytosol	68.22	58.65
TraesCS1D01G033600.1	Wheat	cytosol	67.93	58.4
TraesCS1D01G033800.1	Wheat	cytosol	67.64	58.29
TraesCS1B01G040200.1	Wheat	cytosol, mitochondrion	68.22	58.21
HORVU1Hr1G089540.1	Barley	mitochondrion	67.64	58.15
CDY07114	Canola	cytosol	68.8	57.56
HORVU2Hr1G004170.4	Barley	plastid	72.59	57.51
HORVU1Hr1G004830.1	Barley	cytosol	66.18	57.18
KRH42776	Soybean	cytosol	41.4	55.69
GSMUA_Achr6P08180_001	Banana	cytosol	63.56	54.5
TraesCS2D01G530600.1	Wheat	cytosol, plastid	73.47	52.72
GSMUA_Achr6P08990_001	Banana	mitochondrion	51.02	51.32
GSMUA_Achr2P22970_001	Banana	mitochondrion	53.64	51.11
GSMUA_Achr11P...	Banana	mitochondrion	52.77	50.28
GSMUA_Achr10P...	Banana	mitochondrion	53.06	50.14
CDY05666	Canola	mitochondrion	58.89	48.33
GSMUA_Achr10P...	Banana	mitochondrion	51.31	48.09
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	51.02	47.81
GSMUA_Achr3P22530_001	Banana	cytosol	42.86	47.27
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	45.19	47.26
GSMUA_Achr5P29740_001	Banana	cytosol, peroxisome, plastid	48.1	44.96
GSMUA_Achr3P01140_001	Banana	cytosol, peroxisome, plasma membrane	53.94	32.29
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	36.15	16.49

Protein Annotations

Gene3D:3.40.47.10	MapMan:50.2.3	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
EnsemblPlantsGene:GSMUA_Achr10G12260_001	EnsemblPlants:GSMUA_Achr10P12260_001	EnsemblPlants:GSMUA_Achr10T12260_001	InterPro:IPR016039	UniProt:M0RHK2	PFAM:PF00195
PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901
InterPro:Thiolase-like	UniParc:UPI000295E652	SEG:seg	:	:	:

Description

Chalcone synthase [Source:GMGC_GENE;Acc:GSMUA_Achr10G12260_001]

Coordinates

chr10:-:21314968..21318120

Molecular Weight (calculated)

37504.3 Da

IEP (calculated)

7.167

GRAVY (calculated)

-0.131

Length

343 amino acids

Sequence
(BLAST)

001: MFERDISRSA SVPARLSLRR RWKPRAEGSA TVLAIGTATP VNVMYQADYP DYYFRITKSE HLTKLKEKFK RMCNTSMIRK RYLHLNEEIL KENPNICAYM
101: APSLDARQDI VVVEVPKLGK EAAVKAIKEW GQPKSKITHL VFCTTSGQGC FAGGTVLRMA KDLAENNRGA RVLVVCSEIT ALSFHGPSES HLDNLVGQAL
201: FGDGAAAIIV GADPDPATEQ PIFQLVSASQ TLLPDSEGAP LGISDWNSIF WIAHPGGPAI LDQVEAMLGL EKEKMKATRE VLKEYGNMAS GTVLFILDEM
301: RKRSAEDGKA TTGEGLEWGV LFGFGPGLTV ETVVLHSIPI ADK

Best Arabidopsis Sequence Match ( AT1G02050.1 )
(BLAST)

001: MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK
101: QRLEIANEAV VEMALEASLG CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR VAKDIAENNP GSRVLLTTSE
201: TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE
301: SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

Arabidopsis Description

PKSAType III polyketide synthase A [Source:UniProtKB/Swiss-Prot;Acc:O23674]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.