Factsheet for GSMUA_Achr4P24540_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P07030_001
GSMUA_Achr4P16830_001
GSMUA_Achr6P10910_001
GSMUA_Achr6P16370_001
GSMUA_Achr8P23330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42800.1	GSMUA_Achr4P16830_001	AT3G55120.1	10536025
AT5G42800.1	GSMUA_Achr10P...	AT5G08640.1	18467451
AT5G42800.1	GSMUA_Achr10P...	AT5G08640.1	18467451
AT5G42800.1	GSMUA_Achr3P07030_001	AT5G08640.1	18467451
AT5G42800.1	GSMUA_Achr8P23330_001	AT5G08640.1	18467451
AT5G42800.1	GSMUA_Achr10P...	AT5G13930.1	10536025
AT5G42800.1	GSMUA_Achr10P...	AT5G13930.1	10536025
AT5G42800.1	GSMUA_Achr6P10910_001	AT5G13930.1	10536025
AT5G42800.1	GSMUA_Achr6P16370_001	AT5G13930.1	10536025
AT5G42800.1	GSMUA_Achr10P...	AT5G13930.1	21669202
AT5G42800.1	GSMUA_Achr10P...	AT5G13930.1	21669202
AT5G42800.1	GSMUA_Achr6P10910_001	AT5G13930.1	21669202
AT5G42800.1	GSMUA_Achr6P16370_001	AT5G13930.1	21669202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g02090.t01	Wine grape	cytosol	27.84	60.87
KRH15169	Soybean	plastid	59.94	60.63
VIT_18s0001g12800.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane, plastid	64.49	60.53
GSMUA_Achr3P31110_001	Banana	cytosol, endoplasmic reticulum, plastid	61.08	60.39
GSMUA_Achr4P10640_001	Banana	cytosol	59.94	59.94
KRH05848	Soybean	plastid	59.66	59.32
KRH71611	Soybean	nucleus	55.97	58.11
AT5G42800.1	Thale cress	cytosol	61.93	57.07
Solyc02g085020.2.1	Tomato	cytosol	60.8	56.46
PGSC0003DMT400009287	Potato	cytosol	60.51	55.76
Bra027457.1-P	Field mustard	cytosol	59.94	54.81
CDY52372	Canola	cytosol	59.94	54.81
CDX95155	Canola	cytosol	59.38	54.29
CDY21246	Canola	cytosol	36.36	52.46
KRH05851	Soybean	extracellular	17.61	50.0
GSMUA_Achr8P01490_001	Banana	cytosol	39.2	39.09
GSMUA_Achr5P00800_001	Banana	mitochondrion	37.78	35.56
GSMUA_AchrUn_...	Banana	cytosol	9.66	27.42

Protein Annotations

EnsemblPlants:GSMUA_Achr4P24540_001	EnsemblPlants:GSMUA_Achr4T24540_001	EnsemblPlantsGene:GSMUA_Achr4G24540_001	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0050662	InterPro:Epimerase_deHydtase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF276
PFAM:PF01370	SUPFAM:SSF51735	UniParc:UPI000295173B	UniProt:M0SRR5	MapMan:9.2.2.9.1	:

Description

Dihydroflavonol-4-reductase [Source:GMGC_GENE;Acc:GSMUA_Achr4G24540_001]

Coordinates

chr4:-:24297768..24299513

Molecular Weight (calculated)

39363.4 Da

IEP (calculated)

6.132

GRAVY (calculated)

-0.135

Length

352 amino acids

Sequence
(BLAST)

001: MAYFRCRPLT TSNPSVGEKG MVCVTGAAGF VGSWLIMRLL EHGYTVKATV RDPNNLRKVK HLLDLPKAST DLTLWKADLV DQGSFDDAVR GCVGVFHVAT
101: PMDFQCSDPE NEVIKPAIDG MMNVLKSCAK AGTVRRVVFT SSAGTTCVHA RRKEEYDENS WSDVEFCRAK KMTGWMYFVS KTLAEKAAWE FAEKNHLDFI
201: SIIPTLVNGP FIIPTMPPSM LSALALVTGN TPHYSILNPV QFVHLDDLCM AHIFLFEHPE AKGRYVCSSH DITISDLAKM LTERYPEYDI PTEFEGIDEV
301: SDVIKFSSKK LTDLGFTFKY SMEDMFDGAI ESCREKGLLP LTTKKEQVDG HN

Best Arabidopsis Sequence Match ( AT5G42800.1 )
(BLAST)

001: MVSQKETVCV TGASGFIGSW LVMRLLERGY FVRATVRDPG NLKKVQHLLD LPNAKTLLTL WKADLSEEGS YDDAINGCDG VFHVATPMDF ESKDPENEVI
101: KPTVNGMLGI MKACVKAKTV RRFVFTSSAG TVNVEEHQKN VYDENDWSDL EFIMSKKMTG WMYFVSKTLA EKAAWDFAEE KGLDFISIIP TLVVGPFITT
201: SMPPSLITAL SPITRNEAHY SIIRQGQYVH LDDLCNAHIF LYEQAAAKGR YICSSHDATI LTISKFLRPK YPEYNVPSTF EGVDENLKSI EFSSKKLTDM
301: GFNFKYSLEE MFIESIETCR QKGFLPVSLS YQSISEIKTK NENIDVKTGD GLTDGMKPCN KTETGITGER TDAPMLAQQM CA

Arabidopsis Description

DFRADihydroflavonol reductase [Source:UniProtKB/TrEMBL;Acc:B1GV15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.