CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69618
CDX69931
CDX70528
CDX72554
CDX73401
CDX73402
CDX78547
CDX91090
CDY07114
CDY09836
CDY21556
CDY40202
CDY40203
CDY47033
CDY53696
CDY65002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42800.1	CDX72554	AT3G55120.1	10536025
AT5G42800.1	CDX73401	AT3G55120.1	10536025
AT5G42800.1	CDX73402	AT3G55120.1	10536025
AT5G42800.1	CDY40202	AT3G55120.1	10536025
AT5G42800.1	CDY40203	AT3G55120.1	10536025
AT5G42800.1	CDY47033	AT3G55120.1	10536025
AT5G42800.1	CDY53696	AT3G55120.1	10536025
AT5G42800.1	CDY65002	AT3G55120.1	10536025
AT5G42800.1	CDX69931	AT5G08640.1	18467451
AT5G42800.1	CDY21556	AT5G08640.1	18467451
AT5G42800.1	CDX69618	AT5G13930.1	10536025
AT5G42800.1	CDX70528	AT5G13930.1	10536025
AT5G42800.1	CDX78547	AT5G13930.1	10536025
AT5G42800.1	CDX91090	AT5G13930.1	10536025
AT5G42800.1	CDY07114	AT5G13930.1	10536025
AT5G42800.1	CDY09836	AT5G13930.1	10536025
AT5G42800.1	CDX69618	AT5G13930.1	21669202
AT5G42800.1	CDX70528	AT5G13930.1	21669202
AT5G42800.1	CDX78547	AT5G13930.1	21669202
AT5G42800.1	CDX91090	AT5G13930.1	21669202
AT5G42800.1	CDY07114	AT5G13930.1	21669202
AT5G42800.1	CDY09836	AT5G13930.1	21669202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52372	Canola	cytosol	70.08	44.42
CDX95155	Canola	cytosol	69.67	44.16
AT5G42800.1	Thale cress	cytosol	68.85	43.98
KRH15169	Soybean	plastid	54.92	38.51
KRH05848	Soybean	plastid	54.51	37.57
PGSC0003DMT400009287	Potato	cytosol	58.2	37.17
Solyc02g085020.2.1	Tomato	cytosol	57.38	36.94
KRH71611	Soybean	nucleus	50.82	36.58
GSMUA_Achr4P24540_001	Banana	cytosol, golgi, plastid	52.46	36.36
EES01135	Sorghum	cytosol	50.41	35.14
VIT_04s0023g02090.t01	Wine grape	cytosol	22.95	34.78
Zm00001d044122_P001	Maize	plastid	49.18	33.61
TraesCS3D01G224600.1	Wheat	cytosol, extracellular, plastid	48.36	33.33
TraesCS3A01G226600.1	Wheat	nucleus	48.36	33.33
EES19023	Sorghum	cytosol, peroxisome, plastid	49.18	33.15
EES04562	Sorghum	plastid	49.18	33.15
Zm00001d011438_P001	Maize	extracellular	48.36	32.69
HORVU3Hr1G056560.2	Barley	cytosol	46.72	32.2
EES01136	Sorghum	plastid	50.82	31.88
TraesCS3B01G257900.2	Wheat	plastid	49.18	31.09
Os01t0633500-00	Rice	cytosol, mitochondrion, plasma membrane, plastid	35.66	27.44
CDY52321	Canola	cytosol	35.25	25.44
CDY25313	Canola	cytosol	35.25	25.44
CDY07276	Canola	cytosol	35.25	25.15
CDY32381	Canola	cytosol	35.25	24.93
CDX92822	Canola	cytosol	35.66	24.51
CDY46656	Canola	cytosol	35.66	24.51
CDY08270	Canola	cytosol	22.13	24.22
CDY57107	Canola	cytosol, peroxisome, plastid	34.43	23.46
CDY72000	Canola	cytosol	33.61	23.3
CDY37037	Canola	mitochondrion	29.1	22.76
CDX74737	Canola	cytosol	32.38	22.44
CDX89264	Canola	mitochondrion	28.69	22.08
HORVU6Hr1G047380.1	Barley	peroxisome	12.3	18.99
HORVU6Hr1G048650.1	Barley	endoplasmic reticulum, plasma membrane	10.66	16.35
KRH05851	Soybean	extracellular	7.79	15.32

Protein Annotations

EnsemblPlants:CDY21246	EnsemblPlantsGene:GSBRNA2T00015540001	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0016853
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF276	PFAM:PF16363	ProteinID:CDY21246
ProteinID:CDY21246.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0004EEEB2A	UniProt:A0A078G751	MapMan:35.1

Description

BnaC02g28770DBnaC02g28770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G751]

Coordinates

chrLK032118:+:226704..228850

Molecular Weight (calculated)

28169.9 Da

IEP (calculated)

7.891

GRAVY (calculated)

-0.355

Length

244 amino acids

Sequence
(BLAST)

001: MVSHKETVCV TGASGFIGSW LVMRLLERGY FVRATVRDPR NMKKKVQHLL DLPKANTQVT LWKADLSDEG SYDDAINGCD GVFHVATPMD FEPKDPKEQT
101: PYEESCLLRL LERLMSRNMK KMSIYDENDW SDLDFVMSKK MTGWTYFLSK TLAEKAAWNY ANLITALSPI TRNEAHYSII RHGQTRQYVY LDDLCNAHIF
201: VYEQGAAKGR YVCSMMQQFS LSPNFLDKNT QNRIITRLLV EIPI

Best Arabidopsis Sequence Match ( AT5G42800.1 )
(BLAST)

001: MVSQKETVCV TGASGFIGSW LVMRLLERGY FVRATVRDPG NLKKVQHLLD LPNAKTLLTL WKADLSEEGS YDDAINGCDG VFHVATPMDF ESKDPENEVI
101: KPTVNGMLGI MKACVKAKTV RRFVFTSSAG TVNVEEHQKN VYDENDWSDL EFIMSKKMTG WMYFVSKTLA EKAAWDFAEE KGLDFISIIP TLVVGPFITT
201: SMPPSLITAL SPITRNEAHY SIIRQGQYVH LDDLCNAHIF LYEQAAAKGR YICSSHDATI LTISKFLRPK YPEYNVPSTF EGVDENLKSI EFSSKKLTDM
301: GFNFKYSLEE MFIESIETCR QKGFLPVSLS YQSISEIKTK NENIDVKTGD GLTDGMKPCN KTETGITGER TDAPMLAQQM CA

Arabidopsis Description

DFRADihydroflavonol reductase [Source:UniProtKB/TrEMBL;Acc:B1GV15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.