CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69618
CDX70528
CDX73739
CDX76159
CDX76765
CDX77983
CDX78547
CDX90656
CDX91090
CDX95155
CDY07114
CDY09836
CDY21246
CDY29008
CDY52372

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	CDX73739	AT3G51240.1	10536025
AT3G55120.1	CDX76159	AT3G51240.1	10536025
AT3G55120.1	CDX76765	AT3G51240.1	10536025
AT3G55120.1	CDX77983	AT3G51240.1	10536025
AT3G55120.1	CDX90656	AT3G51240.1	10536025
AT3G55120.1	CDY29008	AT3G51240.1	10536025
AT3G55120.1	CDX69618	AT5G13930.1	10536025
AT3G55120.1	CDX70528	AT5G13930.1	10536025
AT3G55120.1	CDX78547	AT5G13930.1	10536025
AT3G55120.1	CDX91090	AT5G13930.1	10536025
AT3G55120.1	CDY07114	AT5G13930.1	10536025
AT3G55120.1	CDY09836	AT5G13930.1	10536025
AT3G55120.1	CDX95155	AT5G42800.1	10536025
AT3G55120.1	CDY21246	AT5G42800.1	10536025
AT3G55120.1	CDY52372	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003209.1-P	Field mustard	plastid	98.68	98.68
CDY53696	Canola	plastid	75.77	86.43
CDY40202	Canola	plastid	86.34	77.78
CDX73402	Canola	plastid	85.9	77.69
CDY47033	Canola	plastid	63.88	75.52
AT3G55120.1	Thale cress	plastid	74.45	68.7
CDX72554	Canola	plastid	67.84	65.81
VIT_13s0067g03820.t01	Wine grape	extracellular	58.15	56.41
CDY40203	Canola	plastid	67.4	55.64
KRG92978	Soybean	plastid	55.07	54.82
CDX73401	Canola	plastid	69.6	51.97
Solyc05g010310.2.1	Tomato	cytosol	50.66	51.8
Solyc05g010320.2.1	Tomato	cytosol	51.54	51.77
CDY71367	Canola	cytosol	21.59	51.58
Zm00001d034635_P001	Maize	cytosol, extracellular	49.78	48.92
EER90629	Sorghum	cytosol	47.14	46.32
Zm00001d012972_P001	Maize	cytosol	47.14	46.32
TraesCS5A01G475600.1	Wheat	golgi, plastid	46.26	45.85
Os03t0819600-01	Rice	cytosol, plasma membrane	46.26	45.06
HORVU5Hr1G112670.1	Barley	cytosol	45.81	45.02
TraesCS5B01G488900.1	Wheat	golgi	45.81	45.02
TraesCS5D01G489000.1	Wheat	cytosol	45.37	44.59
GSMUA_Achr4P16830_001	Banana	cytosol	43.17	41.53
TraesCS7B01G038200.1	Wheat	cytosol	36.56	37.05
CDX70163	Canola	cytosol	23.35	25.85
CDX98830	Canola	cytosol	22.91	25.37

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:3.50.70.10	MapMan:9.2.2.2.1	GO:A0A078JHW1	UniProt:A0A078JHW1	EnsemblPlants:CDY65002
ProteinID:CDY65002	ProteinID:CDY65002.1	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016872	EnsemblPlantsGene:GSBRNA2T00043998001
InterPro:IPR016088	PFAM:PF02431	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	MetaCyc:PWY-2002	MetaCyc:PWY-5059
MetaCyc:PWY-6325	MetaCyc:PWY-6787	MetaCyc:PWY-7397	SUPFAM:SSF54626	UniPathway:UPA00154	UniParc:UPI0004EEEF93

Description

BnaCnng45660DChalcone-flavonone isomerase family protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHW1]

Coordinates

chrLK034621:-:667..2521

Molecular Weight (calculated)

24621.6 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.064

Length

227 amino acids

Sequence
(BLAST)

001: MSSSHCPTPL PSVTKLQVDS VTFPPSVISP ASSNPLFLGG AGVRGLDIHG KFVIFTVIGV YLDAVAVPSL FVKWKGKTTE ELTESVPFFR EIVTGSFEKF
101: IKVTMKLPLT GQQYSEKVTE NCVAIWKSLG IYTDSEAKAV KKFLEVFKDQ TFPPGASILF ALSPNGSLTI AFSKDDSIPK TGKAVIENKL LAEALMKENK
201: VEKDATKTDN QDEANDVSLG DKLAKEN

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.