CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 7
endoplasmic reticulum 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94730
KRH05848
KRH05851
KRH08080
KRH15169
KRH27737
KRH37579
KRH42757
KRH42758
KRH42759
KRH42760
KRH42775
KRH42776
KRH42778
KRH42780
KRH42783
KRH58872
KRH69784
KRH69787
KRH71115
KRH71611
KRH75544
KRH77699

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	KRH08080	AT3G51240.1	10536025
AT3G55120.1	KRH69784	AT3G51240.1	10536025
AT3G55120.1	KRH69787	AT3G51240.1	10536025
AT3G55120.1	KRG94730	AT5G13930.1	10536025
AT3G55120.1	KRH27737	AT5G13930.1	10536025
AT3G55120.1	KRH37579	AT5G13930.1	10536025
AT3G55120.1	KRH42757	AT5G13930.1	10536025
AT3G55120.1	KRH42758	AT5G13930.1	10536025
AT3G55120.1	KRH42759	AT5G13930.1	10536025
AT3G55120.1	KRH42760	AT5G13930.1	10536025
AT3G55120.1	KRH42775	AT5G13930.1	10536025
AT3G55120.1	KRH42776	AT5G13930.1	10536025
AT3G55120.1	KRH42778	AT5G13930.1	10536025
AT3G55120.1	KRH42780	AT5G13930.1	10536025
AT3G55120.1	KRH42783	AT5G13930.1	10536025
AT3G55120.1	KRH58872	AT5G13930.1	10536025
AT3G55120.1	KRH71115	AT5G13930.1	10536025
AT3G55120.1	KRH75544	AT5G13930.1	10536025
AT3G55120.1	KRH77699	AT5G13930.1	10536025
AT3G55120.1	KRH05848	AT5G42800.1	10536025
AT3G55120.1	KRH05851	AT5G42800.1	10536025
AT3G55120.1	KRH15169	AT5G42800.1	10536025
AT3G55120.1	KRH71611	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g03820.t01	Wine grape	extracellular	62.28	60.68
Solyc05g010310.2.1	Tomato	cytosol	57.89	59.46
Solyc05g010320.2.1	Tomato	cytosol	58.77	59.29
CDY53696	Canola	plastid	49.56	56.78
AT3G55120.1	Thale cress	plastid	60.53	56.1
AT5G66220.1	Thale cress	cytosol	42.54	55.75
Bra003209.1-P	Field mustard	plastid	54.82	55.07
CDY65002	Canola	plastid	54.82	55.07
CDY40202	Canola	plastid	60.53	54.76
Bra007142.1-P	Field mustard	plastid	60.09	54.58
CDX73402	Canola	plastid	59.65	54.18
Bra017728.1-P	Field mustard	plastid	45.18	52.28
CDX72554	Canola	plastid	53.07	51.71
Zm00001d034635_P001	Maize	cytosol, extracellular	52.19	51.52
CDY47033	Canola	plastid	42.98	51.04
Zm00001d012972_P001	Maize	cytosol	51.32	50.65
EER90629	Sorghum	cytosol	50.88	50.22
HORVU5Hr1G112670.1	Barley	cytosol	50.44	49.78
TraesCS5A01G475600.1	Wheat	golgi, plastid	50.0	49.78
KRG92977	Soybean	cytosol, peroxisome, plastid	49.12	49.56
TraesCS5D01G489000.1	Wheat	cytosol	50.0	49.35
KRH36227	Soybean	nucleus	48.68	49.12
Os03t0819600-01	Rice	cytosol, plasma membrane	50.0	48.93
TraesCS5B01G488900.1	Wheat	golgi	48.68	48.05
KRG92975	Soybean	endoplasmic reticulum	45.18	47.25
GSMUA_Achr4P16830_001	Banana	cytosol	48.68	47.03
TraesCS7B01G038200.1	Wheat	cytosol	41.23	41.96
CDY71367	Canola	cytosol	17.11	41.05
Bra039362.1-P	Field mustard	cytosol	16.23	40.66
CDY40203	Canola	plastid	46.05	38.18
CDX73401	Canola	plastid	50.88	38.16
Bra007145.1-P	Field mustard	plastid	50.0	38.13
KRH64204	Soybean	nucleus	26.75	29.19
KRH53728	Soybean	endoplasmic reticulum, nucleus	25.88	28.23

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	Gene3D:3.50.70.10	MapMan:9.2.2.2.1	EMBL:ACUP02012777	EMBL:BT089600
UniProt:C6SWQ7	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	EnsemblPlantsGene:GLYMA_20G241700
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009813
GO:GO:0016853	GO:GO:0016872	GO:GO:0045430	GO:GO:0080167	InterPro:IPR016088	InterPro:IPR016089
EnsemblPlants:KRG92978	ProteinID:KRG92978	ProteinID:KRG92978.1	PFAM:PF02431	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8
MetaCyc:PWY-2002	MetaCyc:PWY-5059	MetaCyc:PWY-6325	MetaCyc:PWY-6787	MetaCyc:PWY-7397	SUPFAM:SSF54626
UniParc:UPI00016EAE1B	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:47263502..47264946

Molecular Weight (calculated)

24882.9 Da

IEP (calculated)

6.348

GRAVY (calculated)

0.085

Length

228 amino acids

Sequence
(BLAST)

001: MAMAFPSVTS VTVENVTFPP TVKPPCSPNT FFLAGAGVRG LQIHHAFVKF TAICIYLQYD ALSFLSVKWK TKSTHQLTES DQFFSDIVTG PFEKFMQVTM
101: IKPLTGQQYS EKVAENCVAI WRSLGIYTDS EAEAIDKFLS VFKDLTFPPG SSILFTVSPN GSLTISFSGD ETIPEVTSAV IENKLLSEAV LESMIGKNGV
201: SPAAKQSLAS RLSHLFKEPG VCDPQSHK

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.