CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36227	Soybean	nucleus	66.06	63.72
KRG92977	Soybean	cytosol, peroxisome, plastid	65.14	62.83
KRG92978	Soybean	plastid	47.25	45.18
KRH53728	Soybean	endoplasmic reticulum, nucleus	28.44	29.67
KRH64204	Soybean	nucleus	28.44	29.67

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	Gene3D:3.50.70.10	EntrezGene:547602	MapMan:9.2.2.2.1	UniProt:A0A0R0EFP3
ProteinID:ABA86740.1	EMBL:AF276302	EMBL:AY595413	EMBL:BT095742	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand
InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	EnsemblPlantsGene:GLYMA_20G241500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009813	GO:GO:0016853	GO:GO:0016872	GO:GO:0045430
GO:GO:0080167	InterPro:IPR016088	InterPro:IPR016089	EnsemblPlants:KRG92975	ProteinID:KRG92975	ProteinID:KRG92975.1
PFAM:PF02431	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	MetaCyc:PWY-2002	MetaCyc:PWY-5059	MetaCyc:PWY-6325
MetaCyc:PWY-6787	MetaCyc:PWY-7397	UniProt:Q93XE6	SUPFAM:SSF54626	UniParc:UPI00000ACC87	SEG:seg

Description

CHI1Ahypothetical protein

Coordinates

chr20:+:47255707..47258273

Molecular Weight (calculated)

23266.1 Da

IEP (calculated)

6.687

GRAVY (calculated)

0.139

Length

218 amino acids

Sequence
(BLAST)

001: MATISAVQVE FLEFPAVVTS PASGKTYFLG GAGERGLTIE GKFIKFTGIG VYLEDKAVPS LAAKWKGKTS EELVHTLHFY RDIISGPFEK LIRGSKILPL
101: AGAEYSKKVM ENCVAHMKSV GTYGDAEAAA IEKFAEAFKN VNFAPGASVF YRQSPDGILG LSFSEDATIP EKEAAVIENK AVSAAVLETM IGEHAVSPDL
201: KRSLASRLPA VLSHGIIV

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.