Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • plastid 1
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytoskeleton, cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH53728 Soybean endoplasmic reticulum, nucleus 95.22 95.22
Solyc05g052240.2.1 Tomato cytosol 60.29 65.28
PGSC0003DMT400030430 Potato cytoskeleton, cytosol, peroxisome 63.64 63.33
Bra009101.1-P Field mustard cytosol 59.33 60.49
CDX70163 Canola cytosol 59.33 60.49
AT5G05270.1 Thale cress cytosol 60.29 60.29
VIT_13s0067g02870.t01 Wine grape extracellular 70.81 59.92
CDX98830 Canola cytosol 58.37 59.51
Os11t0116300-01 Rice cytosol, plasma membrane 59.33 58.49
Os12t0115700-01 Rice cytosol 58.85 58.02
TraesCS5D01G145400.1 Wheat cytosol, golgi 55.5 53.46
TraesCS5B01G145800.1 Wheat cytosol, golgi 54.55 52.53
TraesCS5A01G146900.1 Wheat cytosol 54.55 52.53
KXG22932 Sorghum cytosol 52.63 49.55
Zm00001d044683_P001 Maize cytosol, extracellular 54.55 47.7
GSMUA_Achr11P... Banana cytosol 59.81 43.55
HORVU5Hr1G046480.1 Barley cytosol, golgi, mitochondrion, plastid 53.11 42.37
KRG92975 Soybean endoplasmic reticulum 29.67 28.44
KRH36227 Soybean nucleus 29.19 26.99
KRG92977 Soybean cytosol, peroxisome, plastid 29.19 26.99
KRG92978 Soybean plastid 29.19 26.75
Protein Annotations
KEGG:00941+5.5.1.6Gene3D:1.10.890.20Gene3D:3.50.70.10MapMan:35.1UniProt:A0A0R4J387EMBL:ACUP02002747
InterPro:Chalcone_isomeraseInterPro:Chalcone_isomerase_3-sandInterPro:Chalcone_isomerase_bundle_sfInterPro:Chalcone_isomerase_sfncoils:CoilEnsemblPlantsGene:GLYMA_04G222400
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009628GO:GO:0009813
GO:GO:0016853GO:GO:0016872GO:GO:0045430GO:GO:0080167InterPro:IPR016088InterPro:IPR016089
EnsemblPlants:KRH64204ProteinID:KRH64204ProteinID:KRH64204.1PFAM:PF02431PANTHER:PTHR28039PANTHER:PTHR28039:SF4
MetaCyc:PWY-2002MetaCyc:PWY-5059MetaCyc:PWY-6325MetaCyc:PWY-6787MetaCyc:PWY-7397SUPFAM:SSF54626
UniParc:UPI00018C6781SEG:seg::::
Description
hypothetical protein
Coordinates
chr4:-:49303783..49305819
Molecular Weight (calculated)
23564.0 Da
IEP (calculated)
4.671
GRAVY (calculated)
-0.161
Length
209 amino acids
Sequence
(BLAST)
001: MATEEVLVDE ITYPSKITTT KPLSLLGHGI TDMEIHFIHV KFYSIGIYLE PEVVGHLEQF KGISAKELEE NDEFFNALIS APVEKFIRLV VIKEIKGAQY
101: GVQIETAVRD RLAAEDKYEE EEEEALEKVI EFFQSKYFKK HSVITYHFPT NSATAEIVVS LEGKEDSKYV IENANVVEAV KKWYLGGSSA VSSSTIRSLA
201: STFSQELSK
Best Arabidopsis Sequence Match ( AT5G05270.2 )
(BLAST)
001: MGTEMVMVHE VPFPPQIITS KPLSLLGQGI TDIEIHFLQV KFTAIGVYLD PSDVKTHLDN WKGKTGKELA GDDDFFDALA SAEMEKVIRV VVIKEIKGAQ
101: YGVQLENTVR DRLAEEDKYE EEEETELEKV VGFFQSKYFK ANSVITYHFS AKDGICEIGF ETEGKEEEKL KVENANVVGM MQRWYLSGSR GVSPSTIVSI
201: ADSISAVLT
Arabidopsis Description
CHI3Probable chalcone--flavonone isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZW3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.