CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 4
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92977	Soybean	cytosol, peroxisome, plastid	96.46	96.46
KRG92975	Soybean	endoplasmic reticulum	63.72	66.06
KRG92978	Soybean	plastid	49.12	48.68
KRH53728	Soybean	endoplasmic reticulum, nucleus	27.88	30.14
KRH64204	Soybean	nucleus	26.99	29.19

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	Gene3D:3.50.70.10	MapMan:9.2.2.2.1	EMBL:ACUP02006722	InterPro:Chalcone_isomerase
InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	EnsemblPlantsGene:GLYMA_10G292200	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009813	GO:GO:0016853	GO:GO:0016872
GO:GO:0045430	GO:GO:0080167	UniProt:I1LFF1	InterPro:IPR016088	InterPro:IPR016089	EnsemblPlants:KRH36227
ProteinID:KRH36227	ProteinID:KRH36227.1	PFAM:PF02431	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	MetaCyc:PWY-2002
MetaCyc:PWY-5059	MetaCyc:PWY-6325	MetaCyc:PWY-6787	MetaCyc:PWY-7397	SUPFAM:SSF54626	UniParc:UPI00016EAE1A

Description

hypothetical protein

Coordinates

chr10:+:51006927..51009538

Molecular Weight (calculated)

24973.5 Da

IEP (calculated)

4.911

GRAVY (calculated)

-0.319

Length

226 amino acids

Sequence
(BLAST)

001: MATPASITNV TVEFLQFPAV VTPPASTKSY FLGGAGVRGL NIEEEFVKFT GIGVYLEDKA VSSLGAKWKG KSAAELLDSL DFYRDIIKGP FEKLIRGSKL
101: RTLDGREYVR KVSENCVAHM ESVGTYSEAE EKAIEEFRNA FKDQNFPPGS TVFYKQSPTG TLGLSFSKDE TIPEHEHAVI DNKPLSEAVL ETMIGEIPVS
201: PALKESLATR FHQFFKELEA NPNNEN

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.