CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64204	Soybean	nucleus	95.22	95.22
Solyc05g052240.2.1	Tomato	cytosol	60.29	65.28
PGSC0003DMT400030430	Potato	cytoskeleton, cytosol, peroxisome	63.64	63.33
AT5G05270.1	Thale cress	cytosol	61.72	61.72
Bra009101.1-P	Field mustard	cytosol	60.29	61.46
CDX70163	Canola	cytosol	60.29	61.46
VIT_13s0067g02870.t01	Wine grape	extracellular	71.77	60.73
CDX98830	Canola	cytosol	59.33	60.49
Os11t0116300-01	Rice	cytosol, plasma membrane	59.33	58.49
Os12t0115700-01	Rice	cytosol	59.33	58.49
TraesCS5D01G145400.1	Wheat	cytosol, golgi	56.94	54.84
TraesCS5A01G146900.1	Wheat	cytosol	55.98	53.92
TraesCS5B01G145800.1	Wheat	cytosol, golgi	55.98	53.92
KXG22932	Sorghum	cytosol	54.07	50.9
Zm00001d044683_P001	Maize	cytosol, extracellular	55.98	48.95
GSMUA_Achr11P...	Banana	cytosol	59.81	43.55
HORVU5Hr1G046480.1	Barley	cytosol, golgi, mitochondrion, plastid	54.55	43.51
KRG92975	Soybean	endoplasmic reticulum	29.67	28.44
KRG92977	Soybean	cytosol, peroxisome, plastid	30.14	27.88
KRH36227	Soybean	nucleus	30.14	27.88
KRG92978	Soybean	plastid	28.23	25.88

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	Gene3D:3.50.70.10	MapMan:35.1	EntrezGene:732547	EMBL:ACUP02003480
EMBL:AY595417	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	ncoils:Coil
EnsemblPlantsGene:GLYMA_06G143000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009813	GO:GO:0016853	GO:GO:0016872	GO:GO:0045430	GO:GO:0080167	InterPro:IPR016088
InterPro:IPR016089	EnsemblPlants:KRH53728	ProteinID:KRH53728	ProteinID:KRH53728.1	PFAM:PF02431	PANTHER:PTHR28039
PANTHER:PTHR28039:SF4	MetaCyc:PWY-2002	MetaCyc:PWY-5059	MetaCyc:PWY-6325	MetaCyc:PWY-6787	MetaCyc:PWY-7397
UniProt:Q53B72	SUPFAM:SSF54626	UniParc:UPI0000508A92	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:11641708..11643699

Molecular Weight (calculated)

23496.9 Da

IEP (calculated)

4.594

GRAVY (calculated)

-0.151

Length

209 amino acids

Sequence
(BLAST)

001: MATEEVLVDE ITYPTKITTT KPLSLLGHGI TDMEIHFIHV KFYSIGVYLE PEVVGHLDQF KGKSAKELED NEEFFNALIS APVEKFIRLV VIKEIKGAQY
101: GVQIETAVRD RLAAEDKYEE EEEEALEKVI EFFQSKYFKK LSVITYHFPA NSATAEIVVS LEGKEDSKYV IENANVVEAI KKWYLGGSSA VSSSTIQSLA
201: STFSQELSK

Best Arabidopsis Sequence Match ( AT5G05270.2 )
(BLAST)

001: MGTEMVMVHE VPFPPQIITS KPLSLLGQGI TDIEIHFLQV KFTAIGVYLD PSDVKTHLDN WKGKTGKELA GDDDFFDALA SAEMEKVIRV VVIKEIKGAQ
101: YGVQLENTVR DRLAEEDKYE EEEETELEKV VGFFQSKYFK ANSVITYHFS AKDGICEIGF ETEGKEEEKL KVENANVVGM MQRWYLSGSR GVSPSTIVSI
201: ADSISAVLT

Arabidopsis Description

CHI3Probable chalcone--flavonone isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.