Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytoskeleton, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 2
- mitochondrion 1
- cytoskeleton 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g052240.2.1 | Tomato | cytosol | 88.57 | 96.37 |
| VIT_13s0067g02870.t01 | Wine grape | extracellular | 75.71 | 64.37 |
| KRH53728 | Soybean | endoplasmic reticulum, nucleus | 63.33 | 63.64 |
| KRH64204 | Soybean | nucleus | 63.33 | 63.64 |
| AT5G05270.1 | Thale cress | cytosol | 62.86 | 63.16 |
| Bra009101.1-P | Field mustard | cytosol | 60.95 | 62.44 |
| CDX70163 | Canola | cytosol | 60.95 | 62.44 |
| CDX98830 | Canola | cytosol | 60.0 | 61.46 |
| Os11t0116300-01 | Rice | cytosol, plasma membrane | 61.9 | 61.32 |
| Os12t0115700-01 | Rice | cytosol | 60.0 | 59.43 |
| TraesCS5D01G145400.1 | Wheat | cytosol, golgi | 58.57 | 56.68 |
| TraesCS5B01G145800.1 | Wheat | cytosol, golgi | 58.57 | 56.68 |
| TraesCS5A01G146900.1 | Wheat | cytosol | 58.1 | 56.22 |
| KXG22932 | Sorghum | cytosol | 58.1 | 54.95 |
| Zm00001d044683_P001 | Maize | cytosol, extracellular | 57.14 | 50.21 |
| GSMUA_Achr11P... | Banana | cytosol | 63.81 | 46.69 |
| HORVU5Hr1G046480.1 | Barley | cytosol, golgi, mitochondrion, plastid | 57.62 | 46.18 |
Protein Annotations
| KEGG:00941+5.5.1.6 | Gene3D:1.10.890.20 | EntrezGene:102583606 | Gene3D:3.50.70.10 | MapMan:35.1 | InterPro:Chalcone_isomerase |
| InterPro:Chalcone_isomerase_3-sand | InterPro:Chalcone_isomerase_bundle_sf | InterPro:Chalcone_isomerase_sf | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016872 | InterPro:IPR016088 | InterPro:IPR016089 | UniProt:M1AU88 | PFAM:PF02431 | EnsemblPlantsGene:PGSC0003DMG400011655 |
| PGSC:PGSC0003DMG400011655 | EnsemblPlants:PGSC0003DMT400030430 | PANTHER:PTHR28039 | PANTHER:PTHR28039:SF4 | SUPFAM:SSF54626 | UniParc:UPI0002951163 |
| RefSeq:XP_006365329.1 | SEG:seg | : | : | : | : |
Description
Chalcone isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400011655]
Coordinates
chr5:+:47476992..47479689
Molecular Weight (calculated)
23853.6 Da
IEP (calculated)
4.456
GRAVY (calculated)
-0.201
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKNEVMVDE IPFPSQFMVN NKPLPLMGHG ITDIEIHFLQ IKFTAIGVYL DPEIVTHLQQ WKGKTGEELT ENDEFFEAIV NAPVDKFLRV VVIKEIKGSQ
101: YGVQLESAIR DRLAEVDKYE EDEEEALEKI VEFFQSKYFK KDSVITYYFP ATSGSAKISC TIEGKENLEI EVENANVVEM MKKWYLGGTR GVSPTTISSL
201: ANNICVELSK
101: YGVQLESAIR DRLAEVDKYE EDEEEALEKI VEFFQSKYFK KDSVITYYFP ATSGSAKISC TIEGKENLEI EVENANVVEM MKKWYLGGTR GVSPTTISSL
201: ANNICVELSK
001: MGTEMVMVHE VPFPPQIITS KPLSLLGQGI TDIEIHFLQV KFTAIGVYLD PSDVKTHLDN WKGKTGKELA GDDDFFDALA SAEMEKVIRV VVIKEIKGAQ
101: YGVQLENTVR DRLAEEDKYE EEEETELEKV VGFFQSKYFK ANSVITYHFS AKDGICEIGF ETEGKEEEKL KVENANVVGM MQRWYLSGSR GVSPSTIVSI
201: ADSISAVLT
101: YGVQLENTVR DRLAEEDKYE EEEETELEKV VGFFQSKYFK ANSVITYHFS AKDGICEIGF ETEGKEEEKL KVENANVVGM MQRWYLSGSR GVSPSTIVSI
201: ADSISAVLT
Arabidopsis Description
CHI3Probable chalcone--flavonone isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.