Factsheet for VIT_13s0067g02870.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052240.2.1	Tomato	cytosol	60.32	77.2
PGSC0003DMT400030430	Potato	cytoskeleton, cytosol, peroxisome	64.37	75.71
KRH53728	Soybean	endoplasmic reticulum, nucleus	60.73	71.77
KRH64204	Soybean	nucleus	59.92	70.81
Bra009101.1-P	Field mustard	cytosol	57.49	69.27
CDX70163	Canola	cytosol	57.49	69.27
AT5G05270.1	Thale cress	cytosol	58.3	68.9
CDX98830	Canola	cytosol	56.68	68.29
Os11t0116300-01	Rice	cytosol, plasma membrane	57.09	66.51
Os12t0115700-01	Rice	cytosol	56.28	65.57
TraesCS5D01G145400.1	Wheat	cytosol, golgi	54.66	62.21
TraesCS5A01G146900.1	Wheat	cytosol	53.85	61.29
TraesCS5B01G145800.1	Wheat	cytosol, golgi	53.85	61.29
KXG22932	Sorghum	cytosol	52.23	58.11
GSMUA_Achr11P...	Banana	cytosol	65.18	56.1
Zm00001d044683_P001	Maize	cytosol, extracellular	52.63	54.39
HORVU5Hr1G046480.1	Barley	cytosol, golgi, mitochondrion, plastid	55.87	52.67
VIT_13s0067g03820.t01	Wine grape	extracellular	26.32	27.78

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	EntrezGene:100255217	wikigene:100255217	Gene3D:3.50.70.10	MapMan:35.1
ProteinID:ADP07932	ProteinID:ADP07932.1	EMBL:AM464998	ProteinID:CAN70349	ProteinID:CAN70349.1	ProteinID:CCB49794
ProteinID:CCB49794.1	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	ncoils:Coil
UniProt:F6HC36	EMBL:FN595514	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009813	GO:GO:0016853	GO:GO:0016872	GO:GO:0045430	GO:GO:0080167
EMBL:GU585855	InterPro:IPR016088	InterPro:IPR016089	EntrezGene:LOC100255217	wikigene:LOC100255217	PFAM:PF02431
PANTHER:PTHR28039	PANTHER:PTHR28039:SF4	SUPFAM:SSF54626	SignalP:SignalP-noTM	TIGR:TC51784	TIGR:TC66339
UniParc:UPI000210A3DE	ArrayExpress:VIT_13s0067g02870	EnsemblPlantsGene:VIT_13s0067g02870	EnsemblPlants:VIT_13s0067g02870.t01	RefSeq:XP_002280158	RefSeq:XP_002280158.1
SEG:seg	:	:	:	:	:

Description

Chalcone-flavonone isomerase family protein [Source:UniProtKB/TrEMBL;Acc:F6HC36]

Coordinates

chr13:+:1553517..1556659

Molecular Weight (calculated)

27464.2 Da

IEP (calculated)

4.584

GRAVY (calculated)

0.036

Length

247 amino acids

Sequence
(BLAST)

001: MGLNISCTLI FLCDSSLNIS FLLLLHHLCS PPPNPQPVMG TEMVMVDEIP FPPQITTAKP LCLLGYGITD IEIHFLQIKF TAIGVYLEPE IVGHLQPWKG
101: KSGKELAEND DFFEALISAP GEKFLRIVVI KEIKGSQYGV QLESAVRDRL AADDKYEEEE EEALEKVVEF FQSKYFKKDS IITFHFPATS CTAEIVFATE
201: GKEESKITVE NANVVEMIKK WYLGGTRGVS PTTISALANT LATELSK

Best Arabidopsis Sequence Match ( AT5G05270.2 )
(BLAST)

001: MGTEMVMVHE VPFPPQIITS KPLSLLGQGI TDIEIHFLQV KFTAIGVYLD PSDVKTHLDN WKGKTGKELA GDDDFFDALA SAEMEKVIRV VVIKEIKGAQ
101: YGVQLENTVR DRLAEEDKYE EEEETELEKV VGFFQSKYFK ANSVITYHFS AKDGICEIGF ETEGKEEEKL KVENANVVGM MQRWYLSGSR GVSPSTIVSI
201: ADSISAVLT

Arabidopsis Description

CHI3Probable chalcone--flavonone isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.