Factsheet for TraesCS5D01G145400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G145800.1	Wheat	cytosol, golgi	98.16	98.16
TraesCS5A01G146900.1	Wheat	cytosol	96.77	96.77
HORVU5Hr1G046480.1	Barley	cytosol, golgi, mitochondrion, plastid	94.93	78.63
Os12t0115700-01	Rice	cytosol	70.05	71.7
Os11t0116300-01	Rice	cytosol, plasma membrane	69.59	71.23
KXG22932	Sorghum	cytosol	65.9	64.41
Zm00001d044683_P001	Maize	cytosol, extracellular	66.82	60.67
Solyc05g052240.2.1	Tomato	cytosol	53.92	60.62
AT5G05270.1	Thale cress	cytosol	58.06	60.29
CDX70163	Canola	cytosol	56.68	60.0
Bra009101.1-P	Field mustard	cytosol	56.68	60.0
CDX98830	Canola	cytosol	55.76	59.02
PGSC0003DMT400030430	Potato	cytoskeleton, cytosol, peroxisome	56.68	58.57
KRH53728	Soybean	endoplasmic reticulum, nucleus	54.84	56.94
KRH64204	Soybean	nucleus	53.46	55.5
VIT_13s0067g02870.t01	Wine grape	extracellular	62.21	54.66
GSMUA_Achr11P...	Banana	cytosol	63.13	47.74
TraesCS5D01G489000.1	Wheat	cytosol	29.95	28.14

Protein Annotations

EnsemblPlants:TraesCS5D01G145400.1	EnsemblPlantsGene:TraesCS5D01G145400	Gene3D:1.10.890.20	Gene3D:3.50.70.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016872	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	InterPro:IPR016088
InterPro:IPR016089	KEGG:00941+5.5.1.6	PANTHER:PTHR28039	PANTHER:PTHR28039:SF4	PFAM:PF02431	SEG:seg
SUPFAM:SSF54626	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:232135975..232136940

Molecular Weight (calculated)

23695.0 Da

IEP (calculated)

4.445

GRAVY (calculated)

-0.062

Length

217 amino acids

Sequence
(BLAST)

001: MGSEQEKKAA ATVEVEGIPF PREIAAAKTL SLVGHGVTDI EIHFLQIKFN AIGVYLDVDG AMEHLQGWKG KSQLMEDEAF FDALVSAPVE KVLRVVVIKE
101: IKGSQYGVQL ESSVRDRLVA ADKYEDEEEE ALEKVSDFFQ SKYFRPGSVV TFHFPATATA APEISFVTEG KEEAKVAVEN AAVAEMIQRW YLGGDSAVSQ
201: TTVRSIADSF AAMLSSP

Best Arabidopsis Sequence Match ( AT5G05270.2 )
(BLAST)

001: MGTEMVMVHE VPFPPQIITS KPLSLLGQGI TDIEIHFLQV KFTAIGVYLD PSDVKTHLDN WKGKTGKELA GDDDFFDALA SAEMEKVIRV VVIKEIKGAQ
101: YGVQLENTVR DRLAEEDKYE EEEETELEKV VGFFQSKYFK ANSVITYHFS AKDGICEIGF ETEGKEEEKL KVENANVVGM MQRWYLSGSR GVSPSTIVSI
201: ADSISAVLT

Arabidopsis Description

CHI3Probable chalcone--flavonone isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.