Factsheet for Solyc05g052240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030430	Potato	cytoskeleton, cytosol, peroxisome	96.37	88.57
VIT_13s0067g02870.t01	Wine grape	extracellular	77.2	60.32
KRH53728	Soybean	endoplasmic reticulum, nucleus	65.28	60.29
KRH64204	Soybean	nucleus	65.28	60.29
AT5G05270.1	Thale cress	cytosol	64.25	59.33
Bra009101.1-P	Field mustard	cytosol	62.69	59.02
CDX70163	Canola	cytosol	62.69	59.02
CDX98830	Canola	cytosol	62.18	58.54
Os11t0116300-01	Rice	cytosol, plasma membrane	63.21	57.55
Os12t0115700-01	Rice	cytosol	62.18	56.6
TraesCS5D01G145400.1	Wheat	cytosol, golgi	60.62	53.92
TraesCS5B01G145800.1	Wheat	cytosol, golgi	59.59	53.0
TraesCS5A01G146900.1	Wheat	cytosol	59.07	52.53
KXG22932	Sorghum	cytosol	60.1	52.25
Zm00001d044683_P001	Maize	cytosol, extracellular	59.07	47.7
GSMUA_Achr11P...	Banana	cytosol	67.36	45.3
HORVU5Hr1G046480.1	Barley	cytosol, golgi, mitochondrion, plastid	58.55	43.13
Solyc05g010320.2.1	Tomato	cytosol	32.64	27.88
Solyc05g010310.2.1	Tomato	cytosol	30.05	26.13

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	Gene3D:3.50.70.10	MapMan:35.1	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand
InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009813	GO:GO:0016872	GO:GO:0045430	GO:GO:0080167
InterPro:IPR016088	InterPro:IPR016089	UniProt:K4C1Q5	PFAM:PF02431	PANTHER:PTHR28039	PANTHER:PTHR28039:SF4
SUPFAM:SSF54626	EnsemblPlantsGene:Solyc05g052240.2	EnsemblPlants:Solyc05g052240.2.1	UniParc:UPI0002765B19	SEG:seg	:

Description

Probable chalcone--flavonone isomerase 3 [Source:Projected from Arabidopsis thaliana (AT5G05270) UniProtKB/Swiss-Prot;Acc:Q8VZW3]

Coordinates

chr5:+:62511942..62514884

Molecular Weight (calculated)

21788.1 Da

IEP (calculated)

4.537

GRAVY (calculated)

-0.181

Length

193 amino acids

Sequence
(BLAST)

001: MVNNKPLPLM GHGITDIEIH FLQIKFTAIG VYLDPEIVTH LQQWKGKTGA ELTENDEFFE AIVNAPVDKF LRVVVIKEIK GSQYGVQLES AIRDRLAEVD
101: KYEEEEEEAL EKIVEFFQSK YFKKDSVITY YFPGASGSAK ISFAIEGKED LEIEVENANV VEMMKKWYLG GTRGVSPTTI SSLANNICVE LSK

Best Arabidopsis Sequence Match ( AT5G05270.2 )
(BLAST)

001: MGTEMVMVHE VPFPPQIITS KPLSLLGQGI TDIEIHFLQV KFTAIGVYLD PSDVKTHLDN WKGKTGKELA GDDDFFDALA SAEMEKVIRV VVIKEIKGAQ
101: YGVQLENTVR DRLAEEDKYE EEEETELEKV VGFFQSKYFK ANSVITYHFS AKDGICEIGF ETEGKEEEKL KVENANVVGM MQRWYLSGSR GVSPSTIVSI
201: ADSISAVLT

Arabidopsis Description

CHI3Probable chalcone--flavonone isomerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.