Factsheet for Solyc05g010320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g083860.2.1
Solyc02g085020.2.1
Solyc05g053550.2.1
Solyc09g091510.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	Solyc02g083860.2.1	AT3G51240.1	10536025
AT3G55120.1	Solyc05g053550.2.1	AT5G13930.1	10536025
AT3G55120.1	Solyc09g091510.2.1	AT5G13930.1	10536025
AT3G55120.1	Solyc02g085020.2.1	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010310.2.1	Tomato	cytosol	73.45	74.77
VIT_13s0067g03820.t01	Wine grape	extracellular	66.37	64.1
Os03t0819600-01	Rice	cytosol, plasma membrane	61.5	59.66
Zm00001d012972_P001	Maize	cytosol	60.62	59.31
Zm00001d034635_P001	Maize	cytosol, extracellular	60.18	58.87
KRG92978	Soybean	plastid	59.29	58.77
EER90629	Sorghum	cytosol	59.73	58.44
TraesCS5A01G475600.1	Wheat	golgi, plastid	58.41	57.64
HORVU5Hr1G112670.1	Barley	cytosol	58.41	57.14
TraesCS5D01G489000.1	Wheat	cytosol	57.96	56.71
GSMUA_Achr4P16830_001	Banana	cytosol	57.52	55.08
TraesCS5B01G488900.1	Wheat	golgi	55.75	54.55
AT3G55120.1	Thale cress	plastid	58.41	53.66
CDX73402	Canola	plastid	57.96	52.19
Bra007142.1-P	Field mustard	plastid	57.52	51.79
CDY53696	Canola	plastid	45.58	51.76
CDY65002	Canola	plastid	51.77	51.54
CDY40202	Canola	plastid	57.08	51.19
Bra003209.1-P	Field mustard	plastid	51.33	51.1
AT5G66220.1	Thale cress	cytosol	38.05	49.43
Bra017728.1-P	Field mustard	plastid	42.48	48.73
CDX72554	Canola	plastid	49.56	47.86
CDY47033	Canola	plastid	40.27	47.4
TraesCS7B01G038200.1	Wheat	cytosol	42.92	43.3
Bra039362.1-P	Field mustard	cytosol	16.81	41.76
CDY71367	Canola	cytosol	16.37	38.95
CDY40203	Canola	plastid	45.13	37.09
CDX73401	Canola	plastid	49.12	36.51
Bra007145.1-P	Field mustard	plastid	48.23	36.45
Solyc05g052240.2.1	Tomato	cytosol	27.88	32.64

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	Gene3D:3.50.70.10	MapMan:9.2.2.2.1	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand
InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009813	GO:GO:0016872	GO:GO:0045430	GO:GO:0080167	InterPro:IPR016088
InterPro:IPR016089	UniProt:K4BXK5	PFAM:PF02431	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	SUPFAM:SSF54626
EnsemblPlantsGene:Solyc05g010320.2	EnsemblPlants:Solyc05g010320.2.1	UniParc:UPI0002767010	:	:	:

Description

Chalcone-flavonone isomerase family protein [Source:UniProtKB/TrEMBL;Acc:K4BXK5]

Coordinates

chr5:+:4465276..4467913

Molecular Weight (calculated)

24639.5 Da

IEP (calculated)

4.559

GRAVY (calculated)

0.041

Length

226 amino acids

Sequence
(BLAST)

001: MAVVTKLQVE NHVFPPTMVN PLGSNNMFFL AGAGNRGLEI EGKFVKFTAI GVYLEESAIP FLADKWKGKS SEELEHSVEF FRDIVTGPFE KFTRVTMILP
101: LTGKQYSEKV AENCVAYWKA IGTYSDAEMQ AIEKFLDVFQ SETFPPGASI LFTQSPLGSL TISFSEDDSV PCVGNAVIEN KQLSEAVLDS IIGEHGVSPA
201: AKCSIAKRVS ELLVCEKPGS ELSSVQ

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.