Factsheet for Bra003209.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006224.1-P
Bra008792.1-P
Bra012862.1-P
Bra014831.1-P
Bra023441.1-P
Bra027457.1-P
Bra036307.1-P
Bra036828.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	Bra012862.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra014831.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra036828.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra006224.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra008792.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra023441.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra036307.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra027457.1-P	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65002	Canola	plastid	98.68	98.68
Bra007142.1-P	Field mustard	plastid	85.9	77.69
Bra017728.1-P	Field mustard	plastid	66.08	76.14
AT3G55120.1	Thale cress	plastid	74.45	68.7
VIT_13s0067g03820.t01	Wine grape	extracellular	57.71	55.98
KRG92978	Soybean	plastid	55.07	54.82
Bra039362.1-P	Field mustard	cytosol	20.7	51.65
Solyc05g010310.2.1	Tomato	cytosol	50.22	51.35
Solyc05g010320.2.1	Tomato	cytosol	51.1	51.33
Bra007145.1-P	Field mustard	plastid	66.52	50.5
Zm00001d034635_P001	Maize	cytosol, extracellular	49.34	48.48
EER90629	Sorghum	cytosol	46.7	45.89
Zm00001d012972_P001	Maize	cytosol	46.7	45.89
TraesCS5A01G475600.1	Wheat	golgi, plastid	45.81	45.41
Os03t0819600-01	Rice	cytosol, plasma membrane	45.81	44.64
HORVU5Hr1G112670.1	Barley	cytosol	45.37	44.59
TraesCS5B01G488900.1	Wheat	golgi	45.37	44.59
TraesCS5D01G489000.1	Wheat	cytosol	44.93	44.16
GSMUA_Achr4P16830_001	Banana	cytosol	42.73	41.1
TraesCS7B01G038200.1	Wheat	cytosol	36.56	37.05
Bra009101.1-P	Field mustard	cytosol	22.91	25.37

Protein Annotations

EnsemblPlants:Bra003209.1	EnsemblPlants:Bra003209.1-P	EnsemblPlantsGene:Bra003209	Gene3D:3.50.70.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016872	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_sf	InterPro:IPR016088	KEGG:00941+5.5.1.6
PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	PFAM:PF02431	SUPFAM:SSF54626	UniParc:UPI00025414AE	UniProt:M4CG76
MapMan:9.2.2.2.1	:	:	:	:	:

Description

AT3G55120 (E=2e-090) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase

Coordinates

chrA07:-:11893719..11895747

Molecular Weight (calculated)

24608.6 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.064

Length

227 amino acids

Sequence
(BLAST)

001: MSSSHCPTPL PSVTKLQVDS VTFQPSVISP ASSNPLFLGG AGVRGLDIHG KFVIFTVIGV YLDAVAVPSL SVKWKGKTTE ELTESVLFFR EIVTGSFEKF
101: IKVTMKLPLT GQQYSEKVTE NCVAIWKSLG IYTDSEAKAV KKFLEVFKDQ TFPPGASILF ALSPNGSLTI AFSKDDSIPK TGKAVIENKL LAEALMKENK
201: VEKDATKTDN QDEANDVSLG DKLAKEN

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.