Factsheet for Bra007142.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006224.1-P
Bra008792.1-P
Bra012862.1-P
Bra014831.1-P
Bra023441.1-P
Bra027457.1-P
Bra036307.1-P
Bra036828.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	Bra012862.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra014831.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra036828.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra006224.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra008792.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra023441.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra036307.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra027457.1-P	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40202	Canola	plastid	95.22	94.84
Bra003209.1-P	Field mustard	plastid	77.69	85.9
AT3G55120.1	Thale cress	plastid	79.28	80.89
Bra017728.1-P	Field mustard	plastid	61.35	78.17
Bra039362.1-P	Field mustard	cytosol	27.89	76.92
VIT_13s0067g03820.t01	Wine grape	extracellular	59.36	63.68
Bra007145.1-P	Field mustard	plastid	72.91	61.2
KRG92978	Soybean	plastid	54.58	60.09
Solyc05g010310.2.1	Tomato	cytosol	52.59	59.46
Solyc05g010320.2.1	Tomato	cytosol	51.79	57.52
Zm00001d034635_P001	Maize	cytosol, extracellular	52.59	57.14
EER90629	Sorghum	cytosol	50.2	54.55
Zm00001d012972_P001	Maize	cytosol	49.8	54.11
TraesCS5A01G475600.1	Wheat	golgi, plastid	49.0	53.71
HORVU5Hr1G112670.1	Barley	cytosol	48.61	52.81
TraesCS5B01G488900.1	Wheat	golgi	48.61	52.81
TraesCS5D01G489000.1	Wheat	cytosol	48.21	52.38
Os03t0819600-01	Rice	cytosol, plasma membrane	48.61	52.36
GSMUA_Achr4P16830_001	Banana	cytosol	47.01	50.0
TraesCS7B01G038200.1	Wheat	cytosol	40.24	45.09
Bra009101.1-P	Field mustard	cytosol	23.51	28.78

Protein Annotations

EnsemblPlants:Bra007142.1	EnsemblPlants:Bra007142.1-P	EnsemblPlantsGene:Bra007142	Gene3D:1.10.890.20	Gene3D:3.50.70.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0016853	GO:GO:0016872	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf
InterPro:Chalcone_isomerase_sf	InterPro:IPR016088	InterPro:IPR016089	KEGG:00941+5.5.1.6	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8
PFAM:PF02431	SUPFAM:SSF54626	UniParc:UPI0002542A21	UniProt:M4CSF0	MapMan:9.2.2.2.1	:

Description

AT3G55120 (E=2e-107) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase

Coordinates

chrA09:-:27538389..27539982

Molecular Weight (calculated)

27048.3 Da

IEP (calculated)

4.486

GRAVY (calculated)

-0.041

Length

251 amino acids

Sequence
(BLAST)

001: MSSSNCPSPL PTVTKLQVDS VTFPPSVISP ASSNPLFLGG AGVRGLDIQG KFVIFTVIGV YLDPVSVPSL SVKWKGKTTE ELTESVPFFR EIVTGSFEKF
101: IKVTMKLPLT GQQYSEKVTE NCVAIWKSLG IYTDSEAKAV ERFLEVFKDE TFPPGASILF ALSPEGSLTV AFSKDDSIPE TGKVVIENKL LAEAVLESII
201: GKNGVSPGAR LSVAERLAQL MNSDKVEEDA TKTDQEEAND LPLGDKLAKE N

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.