Factsheet for Bra007145.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006224.1-P
Bra008792.1-P
Bra012862.1-P
Bra014831.1-P
Bra023441.1-P
Bra027457.1-P
Bra036307.1-P
Bra036828.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	Bra012862.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra014831.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra036828.1-P	AT3G51240.1	10536025
AT3G55120.1	Bra006224.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra008792.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra023441.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra036307.1-P	AT5G13930.1	10536025
AT3G55120.1	Bra027457.1-P	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40203	Canola	plastid	85.62	93.09
Bra007142.1-P	Field mustard	plastid	61.2	72.91
Bra039362.1-P	Field mustard	cytosol	21.74	71.43
Bra003209.1-P	Field mustard	plastid	50.5	66.52
AT3G55120.1	Thale cress	plastid	50.84	61.79
Bra017728.1-P	Field mustard	plastid	40.47	61.42
VIT_13s0067g03820.t01	Wine grape	extracellular	39.8	50.85
KRG92978	Soybean	plastid	38.13	50.0
Solyc05g010320.2.1	Tomato	cytosol	36.45	48.23
Solyc05g010310.2.1	Tomato	cytosol	35.79	48.2
Zm00001d034635_P001	Maize	cytosol, extracellular	36.45	47.19
TraesCS5B01G488900.1	Wheat	golgi	35.79	46.32
EER90629	Sorghum	cytosol	35.45	45.89
TraesCS5A01G475600.1	Wheat	golgi, plastid	34.11	44.54
Os03t0819600-01	Rice	cytosol, plasma membrane	34.45	44.21
HORVU5Hr1G112670.1	Barley	cytosol	34.11	44.16
Zm00001d012972_P001	Maize	cytosol	34.11	44.16
TraesCS5D01G489000.1	Wheat	cytosol	33.78	43.72
GSMUA_Achr4P16830_001	Banana	cytosol	34.11	43.22
TraesCS7B01G038200.1	Wheat	cytosol	29.43	39.29
Bra009101.1-P	Field mustard	cytosol	18.06	26.34

Protein Annotations

EnsemblPlants:Bra007145.1	EnsemblPlants:Bra007145.1-P	EnsemblPlantsGene:Bra007145	Gene3D:1.10.890.20	Gene3D:3.50.70.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0016872	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf
InterPro:IPR016088	InterPro:IPR016089	KEGG:00941+5.5.1.6	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	PFAM:PF02431
SUPFAM:SSF54626	UniParc:UPI0002542A24	UniProt:M4CSF3	MapMan:50.5.5	:	:

Description

AT3G55120 (E=1e-043) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase

Coordinates

chrA09:-:27555027..27556726

Molecular Weight (calculated)

32687.1 Da

IEP (calculated)

5.786

GRAVY (calculated)

-0.195

Length

299 amino acids

Sequence
(BLAST)

001: MFSSGIQTPL PSVTNLQVES VNFPPSVISP ASSNRLFLAG AGVQGLDIQG DFVISTVIGV YLDPNALEGL PFCGTTEELA ESVPFFRQIV TGPFEKFIKV
101: TMKLPLTGQQ YSEKVTENCE AIWESLGINA YSDSHICEDC DPPPGAKLRF NKITKTFGPY RHYSRGHAVV RFLEIFKHKK FPPGASILFA FSPKGSLTVA
201: FSSDDGIPKR GNTAIENKFL AEAILESIIG KNGVSPGARL SVAERLAQLM KLERRAETLI LADKKIMKNN EVKEDATKTK TDQEEANDLS LGDKLAEEN

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.