CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69618
CDX70528
CDX73739
CDX76159
CDX76765
CDX77983
CDX78547
CDX90656
CDX91090
CDX95155
CDY07114
CDY09836
CDY21246
CDY29008
CDY52372

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	CDX73739	AT3G51240.1	10536025
AT3G55120.1	CDX76159	AT3G51240.1	10536025
AT3G55120.1	CDX76765	AT3G51240.1	10536025
AT3G55120.1	CDX77983	AT3G51240.1	10536025
AT3G55120.1	CDX90656	AT3G51240.1	10536025
AT3G55120.1	CDY29008	AT3G51240.1	10536025
AT3G55120.1	CDX69618	AT5G13930.1	10536025
AT3G55120.1	CDX70528	AT5G13930.1	10536025
AT3G55120.1	CDX78547	AT5G13930.1	10536025
AT3G55120.1	CDX91090	AT5G13930.1	10536025
AT3G55120.1	CDY07114	AT5G13930.1	10536025
AT3G55120.1	CDY09836	AT5G13930.1	10536025
AT3G55120.1	CDX95155	AT5G42800.1	10536025
AT3G55120.1	CDY21246	AT5G42800.1	10536025
AT3G55120.1	CDY52372	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007145.1-P	Field mustard	plastid	93.09	85.62
CDX73401	Canola	plastid	82.91	75.0
CDY65002	Canola	plastid	55.64	67.4
CDY40202	Canola	plastid	59.27	64.68
CDX73402	Canola	plastid	58.55	64.14
CDY53696	Canola	plastid	44.73	61.81
CDY47033	Canola	plastid	42.55	60.94
AT3G55120.1	Thale cress	plastid	49.82	55.69
CDX72554	Canola	plastid	46.91	55.13
VIT_13s0067g03820.t01	Wine grape	extracellular	40.36	47.44
CDY71367	Canola	cytosol	16.36	47.37
KRG92978	Soybean	plastid	38.18	46.05
Solyc05g010320.2.1	Tomato	cytosol	37.09	45.13
Solyc05g010310.2.1	Tomato	cytosol	36.36	45.05
Zm00001d034635_P001	Maize	cytosol, extracellular	36.73	43.72
TraesCS5B01G488900.1	Wheat	golgi	36.0	42.86
EER90629	Sorghum	cytosol	35.27	41.99
Os03t0819600-01	Rice	cytosol, plasma membrane	34.91	41.2
Zm00001d012972_P001	Maize	cytosol	34.55	41.13
TraesCS5A01G475600.1	Wheat	golgi, plastid	34.18	41.05
HORVU5Hr1G112670.1	Barley	cytosol	34.18	40.69
TraesCS5D01G489000.1	Wheat	cytosol	33.82	40.26
GSMUA_Achr4P16830_001	Banana	cytosol	33.82	39.41
TraesCS7B01G038200.1	Wheat	cytosol	29.09	35.71
CDX70163	Canola	cytosol	16.73	22.44
CDX98830	Canola	cytosol	16.36	21.95

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:3.50.70.10	MapMan:50.5.5	GO:A0A078HTX6	UniProt:A0A078HTX6	EnsemblPlants:CDY40203
ProteinID:CDY40203	ProteinID:CDY40203.1	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0016872	EnsemblPlantsGene:GSBRNA2T00069347001	InterPro:IPR016088	PFAM:PF02431	PANTHER:PTHR28039
PANTHER:PTHR28039:SF8	MetaCyc:PWY-2002	MetaCyc:PWY-5059	MetaCyc:PWY-6325	MetaCyc:PWY-6787	MetaCyc:PWY-7397
SUPFAM:SSF54626	UniPathway:UPA00154	UniParc:UPI0004EE6681	:	:	:

Description

BnaA09g34850DChalcone-flavonone isomerase family protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTX6]

Coordinates

chrLK032466:-:29417..32533

Molecular Weight (calculated)

30147.9 Da

IEP (calculated)

5.416

GRAVY (calculated)

-0.199

Length

275 amino acids

Sequence
(BLAST)

001: MFSSGIQTPL PSVTNLQVDS VNFPPSVISP ASSNRLFLAG AGVQGLDIQG EFVISTVIGV YLDPNALEGL PFCGTTEELA ESVPFFRQIV TGPFEKFIKV
101: TMKLPLTEQQ YSEKVTENCE AIWESLGINA YSDSHICEHC DPPPSAKLRF NKITKTFGPY RHYSRGHAVV RFLEIFKHKK FPPGASILFA ISPKGSLTVA
201: FSSDDGIPKR GNTAIENKFL AEAILESIIG KNGTLILADK KFMKNNEVKE DATKTKTDQE EANDLSLGDK LAEEN

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.