Factsheet for TraesCS5A01G475600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	cytosol, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

plastid: 22736107
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G032100.1
TraesCS1A01G032300.1
TraesCS1B01G040000.1
TraesCS1B01G040100.1
TraesCS1B01G040200.1
TraesCS1B01G040300.1
TraesCS1B01G040500.1
TraesCS1B01G041000.1
TraesCS1D01G033600.1
TraesCS1D01G033800.1
TraesCS2A01G025500.1
TraesCS2A01G025600.1
TraesCS2A01G025700.1
TraesCS2A01G035300.1
TraesCS2A01G493500.1
TraesCS2A01G527700.2
TraesCS2B01G038600.1
TraesCS2B01G038700.1
TraesCS2B01G048400.1
TraesCS2B01G521500.1
TraesCS2B01G558400.1
TraesCS2B01G613100.1
TraesCS2B01G613300.1
TraesCS2D01G027700.1
TraesCS2D01G027800.1
TraesCS2D01G027900.2
TraesCS2D01G034500.1
TraesCS2D01G493400.1
TraesCS2D01G530600.1
TraesCS3A01G226600.1
TraesCS3B01G257900.2
TraesCS3D01G224600.1
TraesCS5D01G488600.1
TraesCS5D01G488700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	TraesCS2A01G493500.1	AT3G51240.1	10536025
AT3G55120.1	TraesCS2B01G521500.1	AT3G51240.1	10536025
AT3G55120.1	TraesCS2B01G613300.1	AT3G51240.1	10536025
AT3G55120.1	TraesCS2D01G493400.1	AT3G51240.1	10536025
AT3G55120.1	TraesCS1A01G032100.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS1A01G032300.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS1B01G040000.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS1B01G040100.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS1B01G040200.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS1B01G040300.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS1B01G040500.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS1B01G041000.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS1D01G033600.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS1D01G033800.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2A01G025500.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2A01G025600.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2A01G025700.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2A01G035300.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2A01G527700.2	AT5G13930.1	10536025
AT3G55120.1	TraesCS2B01G038600.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2B01G038700.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2B01G048400.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2B01G558400.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2B01G613100.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2D01G027700.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2D01G027800.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2D01G027900.2	AT5G13930.1	10536025
AT3G55120.1	TraesCS2D01G034500.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS2D01G530600.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS5D01G488600.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS5D01G488700.1	AT5G13930.1	10536025
AT3G55120.1	TraesCS3A01G226600.1	AT5G42800.1	10536025
AT3G55120.1	TraesCS3B01G257900.2	AT5G42800.1	10536025
AT3G55120.1	TraesCS3D01G224600.1	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G489000.1	Wheat	cytosol	94.32	93.51
HORVU5Hr1G112670.1	Barley	cytosol	93.89	93.07
TraesCS5B01G488900.1	Wheat	golgi	89.08	88.31
Os03t0819600-01	Rice	cytosol, plasma membrane	79.04	77.68
EER90629	Sorghum	cytosol	76.86	76.19
Zm00001d034635_P001	Maize	cytosol, extracellular	75.55	74.89
Zm00001d012972_P001	Maize	cytosol	75.55	74.89
VIT_13s0067g03820.t01	Wine grape	extracellular	60.26	58.97
Solyc05g010320.2.1	Tomato	cytosol	57.64	58.41
GSMUA_Achr4P16830_001	Banana	cytosol	57.21	55.51
Solyc05g010310.2.1	Tomato	cytosol	52.4	54.05
AT3G55120.1	Thale cress	plastid	54.15	50.41
KRG92978	Soybean	plastid	49.78	50.0
CDX73402	Canola	plastid	54.15	49.4
CDY40202	Canola	plastid	54.15	49.21
Bra007142.1-P	Field mustard	plastid	53.71	49.0
CDY53696	Canola	plastid	42.36	48.74
AT5G66220.1	Thale cress	cytosol	35.81	47.13
CDY65002	Canola	plastid	45.85	46.26
Bra003209.1-P	Field mustard	plastid	45.41	45.81
CDX72554	Canola	plastid	46.72	45.73
Bra017728.1-P	Field mustard	plastid	39.3	45.69
CDY47033	Canola	plastid	37.55	44.79
Bra039362.1-P	Field mustard	cytosol	15.72	39.56
CDY71367	Canola	cytosol	16.16	38.95
CDX73401	Canola	plastid	46.29	34.87
CDY40203	Canola	plastid	41.05	34.18
Bra007145.1-P	Field mustard	plastid	44.54	34.11
TraesCS5A01G146900.1	Wheat	cytosol	28.38	29.95

Protein Annotations

EnsemblPlants:TraesCS5A01G475600.1	EnsemblPlantsGene:TraesCS5A01G475600	Gene3D:1.10.890.20	Gene3D:3.50.70.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016872	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	InterPro:IPR016088
InterPro:IPR016089	KEGG:00941+5.5.1.6	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	PFAM:PF02431	SEG:seg
SUPFAM:SSF54626	MapMan:9.2.2.2.1	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:650626939..650627830

Molecular Weight (calculated)

23590.1 Da

IEP (calculated)

4.774

GRAVY (calculated)

0.284

Length

229 amino acids

Sequence
(BLAST)

001: MAVSELEVDG VVFPPLARPP GSEHAHFLAG AGVRGMEIGG NFIKFTAIGV YLQADAAVPA LAAKWAGKPA ADLASDAAFF RDVVTGEFEK FTRVTMILPL
101: TGAQYSDKVT ENCVAYWKAN GVYTDAEAAA VDKFKEAFGP HSFAPGASIL FTHSPAGVLT VAFSKDSSVP ESGGVAIENA RLCEAVLESI IGEHGVSPAA
201: KLSLATRVAE LLKGAAGGEP AVEPVSVSV

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.