CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01135
EES01136
EES04562
EES08604
EES09858
EES09859
EES09860
EES09862
EES09863
EES09864
EES09865
EES13031
EES14634
EES19023
KXG27349
KXG29016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	EES13031	AT3G51240.1	10536025
AT3G55120.1	KXG27349	AT3G51240.1	10536025
AT3G55120.1	EES08604	AT5G13930.1	10536025
AT3G55120.1	EES09858	AT5G13930.1	10536025
AT3G55120.1	EES09859	AT5G13930.1	10536025
AT3G55120.1	EES09860	AT5G13930.1	10536025
AT3G55120.1	EES09862	AT5G13930.1	10536025
AT3G55120.1	EES09863	AT5G13930.1	10536025
AT3G55120.1	EES09864	AT5G13930.1	10536025
AT3G55120.1	EES09865	AT5G13930.1	10536025
AT3G55120.1	EES14634	AT5G13930.1	10536025
AT3G55120.1	KXG29016	AT5G13930.1	10536025
AT3G55120.1	EES01135	AT5G42800.1	10536025
AT3G55120.1	EES01136	AT5G42800.1	10536025
AT3G55120.1	EES04562	AT5G42800.1	10536025
AT3G55120.1	EES19023	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034635_P001	Maize	cytosol, extracellular	87.88	87.88
Zm00001d012972_P001	Maize	cytosol	84.42	84.42
HORVU5Hr1G112670.1	Barley	cytosol	77.92	77.92
Os03t0819600-01	Rice	cytosol, plasma membrane	78.36	77.68
TraesCS5D01G489000.1	Wheat	cytosol	77.06	77.06
TraesCS5A01G475600.1	Wheat	golgi, plastid	76.19	76.86
TraesCS5B01G488900.1	Wheat	golgi	74.89	74.89
VIT_13s0067g03820.t01	Wine grape	extracellular	64.07	63.25
Solyc05g010320.2.1	Tomato	cytosol	58.44	59.73
GSMUA_Achr4P16830_001	Banana	cytosol	59.31	58.05
Solyc05g010310.2.1	Tomato	cytosol	55.41	57.66
AT3G55120.1	Thale cress	plastid	56.71	53.25
KRG92978	Soybean	plastid	50.22	50.88
CDY40202	Canola	plastid	54.98	50.4
Bra007142.1-P	Field mustard	plastid	54.55	50.2
CDX73402	Canola	plastid	54.11	49.8
CDY53696	Canola	plastid	42.42	49.25
Bra017728.1-P	Field mustard	plastid	40.69	47.72
CDX72554	Canola	plastid	48.05	47.44
CDY65002	Canola	plastid	46.32	47.14
Bra003209.1-P	Field mustard	plastid	45.89	46.7
AT5G66220.1	Thale cress	cytosol	35.06	46.55
CDY47033	Canola	plastid	38.53	46.35
Bra039362.1-P	Field mustard	cytosol	16.88	42.86
CDY71367	Canola	cytosol	16.45	40.0
CDX73401	Canola	plastid	47.19	35.86
Bra007145.1-P	Field mustard	plastid	45.89	35.45
CDY40203	Canola	plastid	41.99	35.27
KXG22932	Sorghum	cytosol	29.87	31.08

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	Gene3D:3.50.70.10	EntrezGene:8057048	MapMan:9.2.2.2.1	UniProt:C5WV22
InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf	InterPro:Chalcone_isomerase_sf	EnsemblPlants:EER90629	ProteinID:EER90629
ProteinID:EER90629.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009813	GO:GO:0016872	GO:GO:0045430	GO:GO:0080167	InterPro:IPR016088	InterPro:IPR016089
PFAM:PF02431	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	MetaCyc:PWY-2002	MetaCyc:PWY-5059	MetaCyc:PWY-6325
MetaCyc:PWY-6787	MetaCyc:PWY-7397	EnsemblPlantsGene:SORBI_3001G035600	SUPFAM:SSF54626	unigene:Sbi.17977	UniParc:UPI0001A81F97
RefSeq:XP_002463631.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:2674768..2676463

Molecular Weight (calculated)

23799.4 Da

IEP (calculated)

4.921

GRAVY (calculated)

0.274

Length

231 amino acids

Sequence
(BLAST)

001: MAVPEVVVEG VVFPPVARPP GSAGSHFLGG AGVRGIEIGG NFIKFTAIGV YLEDAAVSAL AKKWAGKTAD ELASDAAFFR DVVTGDFEKF TRVTMLLPLT
101: GEQYAGKVTE NCVAFWKAVG LYTDAEGVAV EKFKEAFKPE TFPPGASILF THSSTGVLTV AFSKDSSVPA SGGVAIENKH LCEAVLESII GEHGVSPAAK
201: LSLAARVSEL LTKGTAGAAD APQAEPVSVT A

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.