CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69618
CDX70528
CDX73739
CDX76159
CDX76765
CDX77983
CDX78547
CDX90656
CDX91090
CDX95155
CDY07114
CDY09836
CDY21246
CDY29008
CDY52372

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55120.1	CDX73739	AT3G51240.1	10536025
AT3G55120.1	CDX76159	AT3G51240.1	10536025
AT3G55120.1	CDX76765	AT3G51240.1	10536025
AT3G55120.1	CDX77983	AT3G51240.1	10536025
AT3G55120.1	CDX90656	AT3G51240.1	10536025
AT3G55120.1	CDY29008	AT3G51240.1	10536025
AT3G55120.1	CDX69618	AT5G13930.1	10536025
AT3G55120.1	CDX70528	AT5G13930.1	10536025
AT3G55120.1	CDX78547	AT5G13930.1	10536025
AT3G55120.1	CDX91090	AT5G13930.1	10536025
AT3G55120.1	CDY07114	AT5G13930.1	10536025
AT3G55120.1	CDY09836	AT5G13930.1	10536025
AT3G55120.1	CDX95155	AT5G42800.1	10536025
AT3G55120.1	CDY21246	AT5G42800.1	10536025
AT3G55120.1	CDY52372	AT5G42800.1	10536025

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73402	Canola	plastid	97.22	97.61
Bra007142.1-P	Field mustard	plastid	94.84	95.22
CDY65002	Canola	plastid	77.78	86.34
CDY53696	Canola	plastid	65.08	82.41
AT3G55120.1	Thale cress	plastid	79.37	81.3
CDY47033	Canola	plastid	58.33	76.56
CDX72554	Canola	plastid	69.84	75.21
CDY71367	Canola	cytosol	25.0	66.32
VIT_13s0067g03820.t01	Wine grape	extracellular	59.13	63.68
CDX73401	Canola	plastid	73.81	61.18
KRG92978	Soybean	plastid	54.76	60.53
CDY40203	Canola	plastid	64.68	59.27
Solyc05g010310.2.1	Tomato	cytosol	51.98	59.01
Zm00001d034635_P001	Maize	cytosol, extracellular	52.78	57.58
Solyc05g010320.2.1	Tomato	cytosol	51.19	57.08
EER90629	Sorghum	cytosol	50.4	54.98
TraesCS5A01G475600.1	Wheat	golgi, plastid	49.21	54.15
Zm00001d012972_P001	Maize	cytosol	49.6	54.11
HORVU5Hr1G112670.1	Barley	cytosol	48.81	53.25
TraesCS5D01G489000.1	Wheat	cytosol	48.41	52.81
Os03t0819600-01	Rice	cytosol, plasma membrane	48.81	52.79
TraesCS5B01G488900.1	Wheat	golgi	48.02	52.38
GSMUA_Achr4P16830_001	Banana	cytosol	46.83	50.0
TraesCS7B01G038200.1	Wheat	cytosol	40.08	45.09
CDX70163	Canola	cytosol	23.81	29.27
CDX98830	Canola	cytosol	23.41	28.78

Protein Annotations

KEGG:00941+5.5.1.6	Gene3D:1.10.890.20	Gene3D:3.50.70.10	MapMan:9.2.2.2.1	GO:A0A078HQT5	UniProt:A0A078HQT5
EnsemblPlants:CDY40202	ProteinID:CDY40202	ProteinID:CDY40202.1	InterPro:Chalcone_isomerase	InterPro:Chalcone_isomerase_3-sand	InterPro:Chalcone_isomerase_bundle_sf
InterPro:Chalcone_isomerase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0016872	EnsemblPlantsGene:GSBRNA2T00069346001	InterPro:IPR016088
InterPro:IPR016089	PFAM:PF02431	PANTHER:PTHR28039	PANTHER:PTHR28039:SF8	MetaCyc:PWY-2002	MetaCyc:PWY-5059
MetaCyc:PWY-6325	MetaCyc:PWY-6787	MetaCyc:PWY-7397	SUPFAM:SSF54626	UniPathway:UPA00154	UniParc:UPI0004EDC458

Description

BnaA09g34840DChalcone-flavonone isomerase family protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQT5]

Coordinates

chrLK032466:-:24655..26499

Molecular Weight (calculated)

27123.4 Da

IEP (calculated)

4.486

GRAVY (calculated)

-0.030

Length

252 amino acids

Sequence
(BLAST)

001: MSSSNCPSPL PTVTKLQVDS VTFPPSVISP ASSNPLFLGG AAGVRGLDIQ GKFVIFTVIG VYLDPVSVTS LSVKWKGKTT EELTESVPFF REIVTGSFEK
101: FIKVTMKLPL TGQQYSEKVT ENCVAIWKSL GIYTDSEAKA VERFLEVFKD ETFPPGASIL FALSPEGSLT VAFSKDDSIP ETGKVVIENK LLAEAVLESI
201: IGKNGVSPGA RLSVAERLAQ LMNSDKVEED ATKTDQEEAN DLPLGDKLAK EN

Best Arabidopsis Sequence Match ( AT3G55120.1 )
(BLAST)

001: MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF
101: EKFIKVTMKL PLTGQQYSEK VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS IPETGIAVIE NKLLAEAVLE
201: SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE KLAKEN

Arabidopsis Description

CHI1Chalcone--flavonone isomerase 1 [Source:UniProtKB/Swiss-Prot;Acc:P41088]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.