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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69931
CDX72554
CDX73401
CDX73402
CDX73739
CDX76159
CDX76765
CDX77983
CDX90656
CDX95155
CDY21246
CDY21556
CDY29008
CDY40202
CDY40203
CDY41522
CDY47033
CDY52372
CDY53696
CDY65002

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G13930.1 CDX73739 AT3G51240.1 10536025
AT5G13930.1 CDX76159 AT3G51240.1 10536025
AT5G13930.1 CDX76765 AT3G51240.1 10536025
AT5G13930.1 CDX77983 AT3G51240.1 10536025
AT5G13930.1 CDX90656 AT3G51240.1 10536025
AT5G13930.1 CDY29008 AT3G51240.1 10536025
AT5G13930.1 CDX72554 AT3G55120.1 10536025
AT5G13930.1 CDX73401 AT3G55120.1 10536025
AT5G13930.1 CDX73402 AT3G55120.1 10536025
AT5G13930.1 CDY40202 AT3G55120.1 10536025
AT5G13930.1 CDY40203 AT3G55120.1 10536025
AT5G13930.1 CDY47033 AT3G55120.1 10536025
AT5G13930.1 CDY53696 AT3G55120.1 10536025
AT5G13930.1 CDY65002 AT3G55120.1 10536025
AT5G13930.1 CDX69931 AT5G08640.1 18467451
AT5G13930.1 CDY21556 AT5G08640.1 18467451
AT5G13930.1 CDX69931 AT5G08640.1 21669202
AT5G13930.1 CDY21556 AT5G08640.1 21669202
AT5G13930.1 CDX95155 AT5G42800.1 10536025
AT5G13930.1 CDY21246 AT5G42800.1 10536025
AT5G13930.1 CDY52372 AT5G42800.1 10536025
AT5G13930.1 CDX95155 AT5G42800.1 21669202
AT5G13930.1 CDY21246 AT5G42800.1 21669202
AT5G13930.1 CDY52372 AT5G42800.1 21669202
AT5G13930.1 CDY41522 AT5G63590.1 18467451
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70528 Canola cytosol 100.0 99.49
Bra006224.1-P Field mustard cytosol 99.24 98.74
CDX69618 Canola cytosol 96.95 96.71
CDY09836 Canola cytosol 96.45 96.2
CDX91090 Canola cytosol 95.94 95.45
AT5G13930.1 Thale cress cytosol 95.18 94.94
CDY51056 Canola cytosol 88.32 88.32
CDY05664 Canola cytosol 87.31 87.31
KRH42776 Soybean cytosol 56.35 87.06
KRG94730 Soybean cytosol 85.79 86.44
GSMUA_Achr6P16370_001 Banana cytosol, mitochondrion, plastid 68.53 86.26
VIT_14s0068g00920.t01 Wine grape cytosol 86.04 86.26
VIT_05s0136g00260.t01 Wine grape cytosol 84.77 85.86
VIT_14s0068g00930.t01 Wine grape cytosol 85.53 85.75
Solyc05g053550.2.1 Tomato cytosol, mitochondrion 84.52 85.6
PGSC0003DMT400049165 Potato cytosol, mitochondrion 84.52 85.6
PGSC0003DMT400076178 Potato cytosol 84.52 85.6
Solyc09g091510.2.1 Tomato cytosol, extracellular 84.52 85.6
GSMUA_Achr6P10910_001 Banana cytosol, mitochondrion 70.56 84.76
CDY07114 Canola cytosol 88.07 84.63
KRH58872 Soybean cytosol 82.99 84.28
KRH42783 Soybean cytosol 82.99 84.28
KRH42780 Soybean cytosol 82.99 84.28
KRH42778 Soybean cytosol 82.99 84.28
KRH42775 Soybean cytosol 82.99 84.28
KRH42759 Soybean cytosol 82.99 84.28
KRH42758 Soybean cytosol 82.99 84.28
KRH77699 Soybean endoplasmic reticulum 82.99 84.06
KRH27737 Soybean cytosol 82.99 84.06
KRH75544 Soybean cytosol 82.74 84.02
KRH42757 Soybean cytosol 82.74 84.02
KRH71115 Soybean cytosol 82.49 83.76
KRH37579 Soybean cytosol 82.49 83.76
KRH42760 Soybean cytosol 82.49 83.76
EES09858 Sorghum cytosol 84.77 83.29
EES09864 Sorghum cytosol 84.26 83.0
EES09865 Sorghum cytosol 84.26 82.79
TraesCS2A01G035300.1 Wheat cytosol 82.74 82.74
GSMUA_Achr10P... Banana cytosol 68.02 82.72
TraesCS2B01G558400.1 Wheat cytosol 83.5 82.66
KXG29016 Sorghum cytosol 84.01 82.54
EES09863 Sorghum cytosol 84.01 82.54
EES09860 Sorghum cytosol 84.01 82.54
EES09859 Sorghum cytosol 84.01 82.54
EES08604 Sorghum cytosol 84.01 82.54
TraesCS2D01G027900.2 Wheat cytosol 82.49 82.49
TraesCS2D01G027700.1 Wheat cytosol 82.49 82.49
TraesCS2B01G038700.1 Wheat cytosol 82.49 82.49
TraesCS2A01G025600.1 Wheat cytosol 82.49 82.49
TraesCS2A01G025700.1 Wheat cytosol, golgi 82.49 82.49
TraesCS2A01G527700.2 Wheat cytosol 83.25 82.41
HORVU2Hr1G005220.3 Barley cytosol 82.49 82.28
Zm00001d052673_P001 Maize cytosol 83.5 82.25
HORVU2Hr1G116390.2 Barley cytosol 82.99 82.16
TraesCS2D01G034500.1 Wheat cytosol 82.23 82.03
TraesCS2B01G048400.1 Wheat cytosol 81.98 81.98
TraesCS2A01G025500.1 Wheat cytosol 81.98 81.98
EES09862 Sorghum cytosol 83.25 81.8
Zm00001d007403_P001 Maize cytosol 82.99 81.55
Os11t0530600-01 Rice cytosol, mitochondrion, plasma membrane 81.98 81.16
TraesCS2D01G027800.1 Wheat cytosol 43.4 81.04
TraesCS2B01G038600.1 Wheat cytosol 73.35 79.83
TraesCS2B01G613100.1 Wheat cytosol 80.46 79.45
PGSC0003DMT400076179 Potato cytosol 74.87 77.84
TraesCS5D01G488600.1 Wheat cytosol 77.92 77.72
TraesCS5D01G488700.1 Wheat cytosol 77.92 77.72
TraesCS1B01G041000.1 Wheat cytosol 77.41 77.22
TraesCS1B01G040300.1 Wheat cytosol, mitochondrion 77.16 76.96
TraesCS1B01G040000.1 Wheat cytosol, mitochondrion 76.9 76.71
TraesCS1B01G040100.1 Wheat cytosol 76.4 76.2
TraesCS1A01G032100.1 Wheat cytosol 76.4 76.2
TraesCS1B01G040200.1 Wheat cytosol, mitochondrion 77.41 75.87
TraesCS1D01G033600.1 Wheat cytosol 76.65 75.69
TraesCS1D01G033800.1 Wheat cytosol 76.4 75.63
TraesCS1A01G032300.1 Wheat cytosol 76.4 75.63
TraesCS1B01G040500.1 Wheat cytosol 76.4 75.44
HORVU2Hr1G004170.4 Barley plastid 82.74 75.29
EES14634 Sorghum cytosol 75.89 75.13
HORVU1Hr1G089540.1 Barley mitochondrion 75.63 74.69
HORVU1Hr1G004830.1 Barley cytosol 75.13 74.56
CDY05666 Canola mitochondrion 77.67 73.21
GSMUA_Achr10P... Banana mitochondrion 63.45 72.89
Os07t0214900-00 Rice cytosol 71.83 70.22
TraesCS2D01G530600.1 Wheat cytosol, plastid 83.25 68.62
CDX69091 Canola cytosol 40.1 40.31
CDY40656 Canola cytosol 39.85 40.05
CDX75466 Canola cytosol 39.59 39.8
CDY34811 Canola cytosol 39.59 39.8
CDX72506 Canola cytosol 39.34 39.54
CDY58814 Canola cytosol 39.34 39.54
CDY17490 Canola cytosol 39.09 39.29
CDX93339 Canola mitochondrion 39.09 39.19
CDY21499 Canola mitochondrion 38.83 39.03
CDX83215 Canola mitochondrion 38.83 39.03
CDY18415 Canola cytosol, mitochondrion 38.83 38.93
Protein Annotations
KEGG:00941+2.3.1.74Gene3D:3.40.47.10MapMan:9.2.2.1.1.1GO:A0A078CPA8EnsemblPlants:CDX78547ProteinID:CDX78547
ProteinID:CDX78547.1InterPro:Chalcone/stilbene_synth_CInterPro:Chalcone/stilbene_synthase_ASInterPro:Chalcone/stilbene_synthase_NGO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0016740GO:GO:0016746GO:GO:0016747
EnsemblPlantsGene:GSBRNA2T00129952001InterPro:IPR016039PFAM:PF00195PFAM:PF02797PIRSF:PIRSF000451ScanProsite:PS00441
PANTHER:PTHR11877PANTHER:PTHR11877:SF43MetaCyc:PWY-5135MetaCyc:PWY-6316MetaCyc:PWY-6787MetaCyc:PWY-7397
InterPro:Polyketide_synthase_type-IIISUPFAM:SSF53901InterPro:Thiolase-likeUniPathway:UPA00154UniParc:UPI0004EE4751:
Description
BnaA03g04590D
Coordinates
chrLK031815:+:1246846..1248421
Molecular Weight (calculated)
43012.1 Da
IEP (calculated)
6.851
GRAVY (calculated)
-0.108
Length
394 amino acids
Sequence
(BLAST)
001: MSRPSSSLDE IRKAQRADGP AGILAIGTAN PANHVIQAEY PDYYFRITNS EHMTDLKEKF KRMCDKSMIR KRHMHLTEEF LKENPNMCAY MAPSLDVRQD
101: IVVVEVPKLG KEAAVKAIKE WGQPKSKITH VVFCTTSGVD MPGADYQLTK LLGLRPSVKR LMMYQQGCFA GGTVLRLAKD LAENNRGARV LVVCSEITAV
201: TFRGPSDTHL DSLVGQALFS DGAAALIVGS DPDASVGEKP IFEMVSAAQT ILPDSDGAID GHLREVGLTF HLLKDVPGLI SKNIEKSLEE AFKPLGISDW
301: NSLFWIAHPG GPAILDEVEK KLGLKAEKMR ATRQVLSEYG NMSSACVLFI LDEMRRKSAK DGVATTGEGL EWGVLFGFGP GLTVETVVLH SVPV
Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)
001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL
Arabidopsis Description
CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.