Factsheet for Solyc05g053550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g083860.2.1
Solyc02g085020.2.1
Solyc05g010310.2.1
Solyc05g010320.2.1
Solyc11g013110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	Solyc02g083860.2.1	AT3G51240.1	10536025
AT5G13930.1	Solyc05g010310.2.1	AT3G55120.1	10536025
AT5G13930.1	Solyc05g010320.2.1	AT3G55120.1	10536025
AT5G13930.1	Solyc11g013110.1.1	AT5G08640.1	18467451
AT5G13930.1	Solyc11g013110.1.1	AT5G08640.1	21669202
AT5G13930.1	Solyc02g085020.2.1	AT5G42800.1	10536025
AT5G13930.1	Solyc02g085020.2.1	AT5G42800.1	21669202
AT5G13930.1	Solyc11g013110.1.1	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	99.23	99.23
Solyc09g091510.2.1	Tomato	cytosol, extracellular	92.03	92.03
VIT_14s0068g00930.t01	Wine grape	cytosol	88.43	87.53
VIT_14s0068g00920.t01	Wine grape	cytosol	88.43	87.53
KRG94730	Soybean	cytosol	87.92	87.47
CDX78547	Canola	cytosol	85.6	84.52
CDX70528	Canola	cytosol	85.6	84.09
Bra006224.1-P	Field mustard	cytosol	84.83	83.33
EES09858	Sorghum	cytosol	85.86	83.29
CDX69618	Canola	cytosol	84.58	83.29
AT5G13930.1	Thale cress	cytosol	84.58	83.29
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	66.84	83.07
CDY09836	Canola	cytosol	84.32	83.04
CDX91090	Canola	cytosol	84.32	82.83
EES09865	Sorghum	cytosol	85.35	82.79
Bra008792.1-P	Field mustard	cytosol	84.06	82.78
EES09864	Sorghum	cytosol	85.09	82.75
EES09859	Sorghum	cytosol	85.09	82.54
EES09860	Sorghum	cytosol	85.09	82.54
EES09863	Sorghum	cytosol	85.09	82.54
KXG29016	Sorghum	cytosol	85.09	82.54
EES08604	Sorghum	cytosol	85.09	82.54
Bra023441.1-P	Field mustard	cytosol	83.29	82.23
Os11t0530600-01	Rice	cytosol, mitochondrion, plasma membrane	84.06	82.16
EES09862	Sorghum	cytosol	84.58	82.04
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	69.15	82.01
TraesCS2A01G025700.1	Wheat	cytosol, golgi	83.03	81.98
TraesCS2B01G038700.1	Wheat	cytosol	82.78	81.73
TraesCS2A01G025600.1	Wheat	cytosol	82.78	81.73
TraesCS2A01G035300.1	Wheat	cytosol	82.78	81.73
TraesCS2D01G027700.1	Wheat	cytosol	82.78	81.73
TraesCS2A01G527700.2	Wheat	cytosol	83.55	81.66
HORVU2Hr1G116390.2	Barley	cytosol	83.55	81.66
TraesCS2D01G027900.2	Wheat	cytosol	82.52	81.47
TraesCS2B01G558400.1	Wheat	cytosol	83.29	81.41
Zm00001d052673_P001	Maize	cytosol	83.55	81.25
TraesCS2D01G027800.1	Wheat	cytosol	43.96	81.04
HORVU2Hr1G005220.3	Barley	cytosol	82.26	81.01
TraesCS2B01G048400.1	Wheat	cytosol	82.01	80.96
TraesCS2A01G025500.1	Wheat	cytosol	82.01	80.96
TraesCS2D01G034500.1	Wheat	cytosol	82.01	80.76
Zm00001d007403_P001	Maize	cytosol	82.52	80.05
TraesCS2B01G038600.1	Wheat	cytosol	74.29	79.83
GSMUA_Achr10P...	Banana	cytosol	66.32	79.63
CDY51056	Canola	cytosol	79.95	78.93
TraesCS2B01G613100.1	Wheat	cytosol	80.72	78.7
Bra020688.1-P	Field mustard	cytosol	79.69	78.68
Bra036307.1-P	Field mustard	cytosol	79.18	78.37
CDY05664	Canola	cytosol	78.92	77.92
TraesCS5D01G488700.1	Wheat	cytosol	78.66	77.47
TraesCS5D01G488600.1	Wheat	cytosol	78.66	77.47
TraesCS1B01G040300.1	Wheat	cytosol, mitochondrion	76.61	75.44
TraesCS1B01G041000.1	Wheat	cytosol	76.35	75.19
TraesCS1B01G040000.1	Wheat	cytosol, mitochondrion	76.35	75.19
TraesCS1A01G032100.1	Wheat	cytosol	75.84	74.68
TraesCS1B01G040100.1	Wheat	cytosol	75.84	74.68
HORVU2Hr1G004170.4	Barley	plastid	83.03	74.6
TraesCS1B01G040200.1	Wheat	cytosol, mitochondrion	76.86	74.38
TraesCS1D01G033600.1	Wheat	cytosol	76.09	74.19
TraesCS1A01G032300.1	Wheat	cytosol	75.84	74.12
TraesCS1D01G033800.1	Wheat	cytosol	75.58	73.87
TraesCS1B01G040500.1	Wheat	cytosol	75.58	73.68
EES14634	Sorghum	cytosol	75.32	73.62
CDY07114	Canola	cytosol	77.38	73.41
HORVU1Hr1G089540.1	Barley	mitochondrion	74.81	72.93
HORVU1Hr1G004830.1	Barley	cytosol	74.29	72.8
GSMUA_Achr10P...	Banana	mitochondrion	62.21	70.55
Os07t0214900-00	Rice	cytosol	72.75	70.22
TraesCS2D01G530600.1	Wheat	cytosol, plastid	83.55	67.99
Solyc05g053170.2.1	Tomato	cytosol	66.84	66.33
CDY05666	Canola	mitochondrion	70.18	65.31
Solyc12g098090.1.1	Tomato	cytosol	71.98	63.93
Solyc01g111070.2.1	Tomato	cytosol	43.96	44.65
Solyc01g090600.2.1	Tomato	cytosol, extracellular, mitochondrion, peroxisome	35.22	38.27

Protein Annotations

KEGG:00941+2.3.1.74	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_AS	InterPro:Chalcone/stilbene_synthase_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009813
GO:GO:0016210	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:K4C235
PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	ScanProsite:PS00441	PANTHER:PTHR11877	PANTHER:PTHR11877:SF43
InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	EnsemblPlantsGene:Solyc05g053550.2	EnsemblPlants:Solyc05g053550.2.1	InterPro:Thiolase-like	UniParc:UPI0002766513

Description

No Description!

Coordinates

chr5:+:63633052..63635193

Molecular Weight (calculated)

42633.7 Da

IEP (calculated)

6.321

GRAVY (calculated)

-0.081

Length

389 amino acids

Sequence
(BLAST)

001: MVTVEEVRRA QRAKGPATIM AIGTATPSNC VDQSTYPDYY FRITNSEHMT ELKEKFKRMC DKSMINKRYM HLTEEILKEN PNICEYMAPS LDARQDIVVV
101: EVPKLGKEAA QKAIKEWGQP KSKITHVVFC TTSGVDMPGA DYQLTKLLGL RPSVKRLMMY QQGCFAGGTV IRLAKDLAEN NKGARVLVVC SEITAVTFRG
201: PSDTHLDSMV GQALFGDGAA AMIIGSDPLP EVERPLFELV SAAQTLLPDS EGAIDGHLRE VGLTFHLLKD VPGLISKNIE KSLIEAFQPL GISDWNSIFW
301: IAHPGGPAIL DQVELKLSLK PEKLRATRQV LSDYGNMSSA CVLFILDEMR KASSKEGLST TGEGLDWGVL FGFGPGLTVE TVVLHSVST

Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)

001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL

Arabidopsis Description

CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.