Factsheet for Os11t0530600-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 15069638
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0633500-00
Os02t0767300-01
Os03t0819600-01
Os04t0662600-00
Os08t0480100-01
Os08t0480200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	Os04t0662600-00	AT3G51240.1	10536025
AT5G13930.1	Os08t0480100-01	AT3G51240.1	10536025
AT5G13930.1	Os08t0480200-01	AT3G51240.1	10536025
AT5G13930.1	Os03t0819600-01	AT3G55120.1	10536025
AT5G13930.1	Os02t0767300-01	AT5G08640.1	18467451
AT5G13930.1	Os02t0767300-01	AT5G08640.1	21669202
AT5G13930.1	Os01t0633500-00	AT5G42800.1	10536025
AT5G13930.1	Os01t0633500-00	AT5G42800.1	21669202
AT5G13930.1	Os02t0767300-01	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08604	Sorghum	cytosol	93.22	92.52
EES09860	Sorghum	cytosol	92.96	92.27
KXG29016	Sorghum	cytosol	92.96	92.27
EES09859	Sorghum	cytosol	92.96	92.27
EES09858	Sorghum	cytosol	92.96	92.27
EES09865	Sorghum	cytosol	92.71	92.02
EES09863	Sorghum	cytosol	92.71	92.02
EES09862	Sorghum	cytosol	92.71	92.02
Zm00001d052673_P001	Maize	cytosol	91.71	91.25
EES09864	Sorghum	cytosol	91.71	91.25
Zm00001d007403_P001	Maize	cytosol	90.45	89.78
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	69.35	88.18
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	70.35	85.37
GSMUA_Achr10P...	Banana	cytosol	68.84	84.57
PGSC0003DMT400076178	Potato	cytosol	82.41	84.32
Solyc09g091510.2.1	Tomato	cytosol, extracellular	82.41	84.32
KRH42776	Soybean	cytosol	54.02	84.31
VIT_14s0068g00930.t01	Wine grape	cytosol	83.17	84.22
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	82.16	84.06
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	82.16	84.06
KRH42758	Soybean	cytosol	81.41	83.51
KRH42759	Soybean	cytosol	81.41	83.51
KRH42775	Soybean	cytosol	81.41	83.51
KRH58872	Soybean	cytosol	81.41	83.51
KRH42783	Soybean	cytosol	81.41	83.51
KRH42757	Soybean	cytosol	81.16	83.25
KRH42778	Soybean	cytosol	81.16	83.25
KRH42780	Soybean	cytosol	81.16	83.25
VIT_14s0068g00920.t01	Wine grape	cytosol	82.16	83.21
VIT_05s0136g00260.t01	Wine grape	cytosol	81.16	83.03
KRH42760	Soybean	cytosol	80.65	82.73
KRG94730	Soybean	cytosol	80.65	82.1
CDX69618	Canola	cytosol	81.41	82.03
AT5G13930.1	Thale cress	cytosol	81.41	82.03
CDX78547	Canola	cytosol	81.16	81.98
KRH37579	Soybean	cytosol	79.9	81.96
KRH75544	Soybean	cytosol	79.9	81.96
Bra008792.1-P	Field mustard	cytosol	81.16	81.77
CDX70528	Canola	cytosol	81.16	81.57
CDX91090	Canola	cytosol	81.16	81.57
CDY09836	Canola	cytosol	80.9	81.52
KRH71115	Soybean	cytosol	79.4	81.44
Bra023441.1-P	Field mustard	cytosol	80.15	80.96
Bra006224.1-P	Field mustard	cytosol	80.4	80.81
KRH77699	Soybean	endoplasmic reticulum	78.89	80.72
KRH27737	Soybean	cytosol	78.89	80.72
Os07t0214900-00	Rice	cytosol	81.41	80.4
Bra020688.1-P	Field mustard	cytosol	77.39	78.17
CDY51056	Canola	cytosol	77.14	77.92
Bra036307.1-P	Field mustard	cytosol	76.88	77.86
PGSC0003DMT400076179	Potato	cytosol	74.12	77.84
CDY05664	Canola	cytosol	76.88	77.67
GSMUA_Achr10P...	Banana	mitochondrion	64.57	74.93
CDY07114	Canola	cytosol	75.88	73.66
CDY05666	Canola	mitochondrion	68.09	64.83
Os11t0529125-00	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	12.06	63.16
Os10t0167900-00	Rice	cytosol	50.0	49.87
Os07t0271500-01	Rice	cytosol	50.25	49.75
Os10t0158400-00	Rice	cytosol	49.75	49.75
Os07t0501100-01	Rice	cytosol	50.5	49.63
Os05t0212900-00	Rice	cytosol	47.99	48.72
Os01t0602600-00	Rice	cytosol	40.45	48.2
Os07t0525900-00	Rice	cytosol	47.99	47.99
Os07t0526400-01	Rice	cytosol	47.99	47.87
Os04t0103900-01	Rice	cytosol	47.24	47.84
Os10t0177300-00	Rice	cytosol, mitochondrion, peroxisome	37.94	47.63
Os05t0212600-00	Rice	cytosol	35.68	47.02
Os11t0529800-00	Rice	cytosol, extracellular	47.24	46.88
Os10t0162856-00	Rice	cytosol	50.25	46.19
Os10t0168500-00	Rice	cytosol, peroxisome, plastid	30.65	46.04
Os11t0529500-00	Rice	cytosol	47.74	46.0
Os05t0213100-00	Rice	cytosol, peroxisome, plastid	48.74	45.43
Os11t0566800-01	Rice	cytosol	45.48	45.36
Os07t0525500-00	Rice	plastid	40.95	41.69
Os07t0411300-00	Rice	cytosol	39.7	39.01
Os10t0484800-01	Rice	cytosol	36.18	37.02

Protein Annotations

KEGG:00941+2.3.1.74	Gene3D:3.40.47.10	EntrezGene:4350636	MapMan:9.2.2.1.1.1	EMBL:AB000801	ProteinID:ABA94123.1
ProteinID:BAB39764.1	ProteinID:BAF28372.1	ProteinID:BAT14279.1	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_AS	InterPro:Chalcone/stilbene_synthase_N
ProteinID:EAZ18579.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009813	GO:GO:0016210	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039
EnsemblPlantsGene:Os11g0530600	EnsemblPlants:Os11t0530600-01	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	ScanProsite:PS00441
PANTHER:PTHR11877	PANTHER:PTHR11877:SF44	InterPro:Polyketide_synthase_type-III	UniProt:Q2R3A1	SUPFAM:SSF53901	InterPro:Thiolase-like
UniParc:UPI00000A28D5	RefSeq:XP_015618054.1	SEG:seg	:	:	:

Description

CHALCONE SYNTHASESimilar to Chalcone synthase C2 (EC 2.3.1.74) (Naringenin-chalcone synthase C2). (Os11t0530600-01)

Coordinates

chr11:-:19277597..19281006

Molecular Weight (calculated)

43267.2 Da

IEP (calculated)

6.190

GRAVY (calculated)

-0.076

Length

398 amino acids

Sequence
(BLAST)

001: MAAAVTVEEV RRAQRAEGPA TVLAIGTATP ANCVYQADYP DYYFRITKSE HMVELKEKFK RMCDKSQIRK RYMHLTEEIL QENPNMCAYM APSLDARQDI
101: VVVEVPKLGK AAAQKAIKEW GQPRSRITHL VFCTTSGVDM PGADYQLAKM LGLRPNVNRL MMYQQGCFAG GTVLRVAKDL AENNRGARVL AVCSEITAVT
201: FRGPSESHLD SMVGQALFGD GAAAVIVGSD PDEAVERPLF QMVSASQTIL PDSEGAIDGH LREVGLTFHL LKDVPGLISK NIERALGDAF TPLGISDWNS
301: IFWVAHPGGP AILDQVEAKV GLDKERMRAT RHVLSEYGNM SSACVLFILD EMRKRSAEDG HATTGEGMDW GVLFGFGPGL TVETVVLHSV PITAGAAA

Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)

001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL

Arabidopsis Description

CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.