CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92978
KRH05848
KRH05851
KRH08080
KRH15169
KRH16579
KRH18787
KRH53203
KRH69784
KRH69787
KRH71611

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13930.1	KRH08080	AT3G51240.1	10536025
AT5G13930.1	KRH69784	AT3G51240.1	10536025
AT5G13930.1	KRH69787	AT3G51240.1	10536025
AT5G13930.1	KRG92978	AT3G55120.1	10536025
AT5G13930.1	KRH16579	AT5G08640.1	18467451
AT5G13930.1	KRH18787	AT5G08640.1	18467451
AT5G13930.1	KRH53203	AT5G08640.1	18467451
AT5G13930.1	KRH16579	AT5G08640.1	21669202
AT5G13930.1	KRH18787	AT5G08640.1	21669202
AT5G13930.1	KRH53203	AT5G08640.1	21669202
AT5G13930.1	KRH05848	AT5G42800.1	10536025
AT5G13930.1	KRH05851	AT5G42800.1	10536025
AT5G13930.1	KRH15169	AT5G42800.1	10536025
AT5G13930.1	KRH71611	AT5G42800.1	10536025
AT5G13930.1	KRH05848	AT5G42800.1	21669202
AT5G13930.1	KRH05851	AT5G42800.1	21669202
AT5G13930.1	KRH15169	AT5G42800.1	21669202
AT5G13930.1	KRH71611	AT5G42800.1	21669202
AT5G13930.1	KRH16579	AT5G63590.1	18467451
AT5G13930.1	KRH18787	AT5G63590.1	18467451
AT5G13930.1	KRH53203	AT5G63590.1	18467451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049165	Potato	cytosol, mitochondrion	87.72	88.17
Solyc05g053550.2.1	Tomato	cytosol, mitochondrion	87.47	87.92
VIT_14s0068g00930.t01	Wine grape	cytosol	88.24	87.79
KRH42776	Soybean	cytosol	57.03	87.45
VIT_14s0068g00920.t01	Wine grape	cytosol	87.72	87.28
Solyc09g091510.2.1	Tomato	cytosol, extracellular	86.44	86.89
PGSC0003DMT400076178	Potato	cytosol	85.93	86.38
KRH42775	Soybean	cytosol	85.17	85.82
KRH42778	Soybean	cytosol	85.17	85.82
KRH42780	Soybean	cytosol	85.17	85.82
KRH42783	Soybean	cytosol	85.17	85.82
KRH42759	Soybean	cytosol	85.17	85.82
KRH42758	Soybean	cytosol	85.17	85.82
KRH42757	Soybean	cytosol	85.17	85.82
CDX78547	Canola	cytosol	86.44	85.79
KRH58872	Soybean	cytosol	84.91	85.57
CDX70528	Canola	cytosol	86.44	85.35
KRH42760	Soybean	cytosol	84.65	85.31
CDX91090	Canola	cytosol	86.19	85.1
AT5G13930.1	Thale cress	cytosol	85.93	85.06
CDX69618	Canola	cytosol	85.93	85.06
KRH75544	Soybean	cytosol	84.4	85.05
CDY09836	Canola	cytosol	85.68	84.81
Bra006224.1-P	Field mustard	cytosol	85.68	84.6
Bra008792.1-P	Field mustard	cytosol	85.42	84.56
KRH37579	Soybean	cytosol	83.89	84.54
Bra023441.1-P	Field mustard	cytosol	85.17	84.52
KRH71115	Soybean	cytosol	83.63	84.28
KRH27737	Soybean	cytosol	83.12	83.55
GSMUA_Achr6P16370_001	Banana	cytosol, mitochondrion, plastid	66.75	83.39
KRH77699	Soybean	endoplasmic reticulum	82.86	83.29
Bra020688.1-P	Field mustard	cytosol	82.86	82.23
CDY51056	Canola	cytosol	82.35	81.73
Bra036307.1-P	Field mustard	cytosol	82.1	81.68
EES09858	Sorghum	cytosol	83.63	81.55
EES09864	Sorghum	cytosol	83.38	81.5
GSMUA_Achr6P10910_001	Banana	cytosol, mitochondrion	68.29	81.4
EES09863	Sorghum	cytosol	83.38	81.3
Zm00001d052673_P001	Maize	cytosol	83.12	81.25
EES09865	Sorghum	cytosol	83.12	81.05
TraesCS2A01G025700.1	Wheat	cytosol, golgi	81.59	80.96
TraesCS2D01G027700.1	Wheat	cytosol	81.59	80.96
HORVU2Hr1G116390.2	Barley	cytosol	82.35	80.9
KXG29016	Sorghum	cytosol	82.86	80.8
EES08604	Sorghum	cytosol	82.86	80.8
EES09859	Sorghum	cytosol	82.86	80.8
EES09860	Sorghum	cytosol	82.86	80.8
TraesCS2A01G025600.1	Wheat	cytosol	81.33	80.71
TraesCS2A01G035300.1	Wheat	cytosol	81.33	80.71
CDY05664	Canola	cytosol	81.33	80.71
TraesCS2B01G038700.1	Wheat	cytosol	81.33	80.71
TraesCS2A01G527700.2	Wheat	cytosol	82.1	80.65
Os11t0530600-01	Rice	cytosol, mitochondrion, plasma membrane	82.1	80.65
GSMUA_Achr10P...	Banana	cytosol	66.75	80.56
Zm00001d007403_P001	Maize	cytosol	82.61	80.55
TraesCS2D01G027900.2	Wheat	cytosol	81.07	80.46
TraesCS2B01G048400.1	Wheat	cytosol	81.07	80.46
TraesCS2B01G558400.1	Wheat	cytosol	81.84	80.4
EES09862	Sorghum	cytosol	82.35	80.3
TraesCS2D01G034500.1	Wheat	cytosol	81.07	80.25
TraesCS2D01G027800.1	Wheat	cytosol	43.22	80.09
HORVU2Hr1G005220.3	Barley	cytosol	80.82	80.0
TraesCS2A01G025500.1	Wheat	cytosol	80.56	79.95
PGSC0003DMT400076179	Potato	cytosol	76.73	79.16
TraesCS2B01G038600.1	Wheat	cytosol	73.15	79.01
TraesCS2B01G613100.1	Wheat	cytosol	79.54	77.94
CDY07114	Canola	cytosol	80.56	76.83
TraesCS5D01G488700.1	Wheat	cytosol	77.24	76.46
TraesCS5D01G488600.1	Wheat	cytosol	77.24	76.46
HORVU2Hr1G004170.4	Barley	plastid	81.59	73.67
TraesCS1B01G040300.1	Wheat	cytosol, mitochondrion	74.42	73.67
TraesCS1B01G041000.1	Wheat	cytosol	74.42	73.67
TraesCS1B01G040000.1	Wheat	cytosol, mitochondrion	74.17	73.42
EES14634	Sorghum	cytosol	74.42	73.12
TraesCS1B01G040100.1	Wheat	cytosol	73.66	72.91
TraesCS1A01G032100.1	Wheat	cytosol	73.4	72.66
TraesCS1B01G040200.1	Wheat	cytosol, mitochondrion	74.68	72.64
TraesCS1D01G033600.1	Wheat	cytosol	73.66	72.18
TraesCS1A01G032300.1	Wheat	cytosol	73.4	72.11
TraesCS1B01G040500.1	Wheat	cytosol	73.4	71.93
TraesCS1D01G033800.1	Wheat	cytosol	73.15	71.86
GSMUA_Achr10P...	Banana	mitochondrion	62.4	71.14
HORVU1Hr1G004830.1	Barley	cytosol	72.12	71.03
HORVU1Hr1G089540.1	Barley	mitochondrion	72.12	70.68
Os07t0214900-00	Rice	cytosol	72.38	70.22
TraesCS2D01G530600.1	Wheat	cytosol, plastid	82.1	67.15
CDY05666	Canola	mitochondrion	71.36	66.75
KRH18039	Soybean	cytosol	51.66	63.52
KRH29108	Soybean	cytosol	40.66	41.09
KRH75257	Soybean	cytosol	39.9	40.21
KRH24136	Soybean	cytosol	35.55	36.87

Protein Annotations

KEGG:00941+2.3.1.74	EntrezGene:100775264	Gene3D:3.40.47.10	MapMan:9.2.2.1.1.1	EMBL:ACUP02012020	InterPro:Chalcone/stilbene_synth_C
InterPro:Chalcone/stilbene_synthase_AS	InterPro:Chalcone/stilbene_synthase_N	EnsemblPlantsGene:GLYMA_19G105100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005773	GO:GO:0005783
GO:GO:0006810	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009611	GO:GO:0009628	GO:GO:0009629	GO:GO:0009705	GO:GO:0009719	GO:GO:0009733
GO:GO:0009753	GO:GO:0009813	GO:GO:0009926	GO:GO:0010224	GO:GO:0016020	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	GO:GO:0031540	UniProt:I1N828	InterPro:IPR016039	EnsemblPlants:KRG94730
ProteinID:KRG94730	ProteinID:KRG94730.1	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	ScanProsite:PS00441
PANTHER:PTHR11877	PANTHER:PTHR11877:SF43	MetaCyc:PWY-5135	MetaCyc:PWY-6316	MetaCyc:PWY-6787	MetaCyc:PWY-7397
InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI000233E02C	:	:

Description

hypothetical protein

Coordinates

chr19:-:35465980..35468885

Molecular Weight (calculated)

43060.1 Da

IEP (calculated)

6.193

GRAVY (calculated)

-0.150

Length

391 amino acids

Sequence
(BLAST)

001: MVTVEEIRNA QRSHGPATIL AFGTATPSNC VSQADYPDYY FRITNSEHMT DLKEKFKRMC EKSMIKKRYM HLTEEFLKEN PNMCEYMAPS LDVRQDVVVM
101: EVPKLGKQAA TKAIKEWGQP KSKITHLVFC TTSGVDMPGA DYQLTKLLGL RPSVKRLMMY QQGCFAGGTV LRLAKDLAEN NKGARVLVVC SEITAVTFRG
201: PSDTHLDSLV GQALFGDGAA ALIIGSDPDP AVERPIFEMI SAAQTILPDS DGAIDGHLRE VGLTFHLLKD VPGIISKNIE KSLVEAFEPI GISDWNSIFW
301: IAHPGGPAIL DQVEEKLRLK PEKLQSTRHV LSEYGNMSSA CVLFILDEMR KKSKEEGKST TGEGLEWGVL FGFGPGLTVE TVVLHSVPLE G

Best Arabidopsis Sequence Match ( AT5G13930.1 )
(BLAST)

001: MVMAGASSLD EIRQAQRADG PAGILAIGTA NPENHVLQAE YPDYYFRITN SEHMTDLKEK FKRMCDKSTI RKRHMHLTEE FLKENPHMCA YMAPSLDTRQ
101: DIVVVEVPKL GKEAAVKAIK EWGQPKSKIT HVVFCTTSGV DMPGADYQLT KLLGLRPSVK RLMMYQQGCF AGGTVLRIAK DLAENNRGAR VLVVCSEITA
201: VTFRGPSDTH LDSLVGQALF SDGAAALIVG SDPDTSVGEK PIFEMVSAAQ TILPDSDGAI DGHLREVGLT FHLLKDVPGL ISKNIVKSLD EAFKPLGISD
301: WNSLFWIAHP GGPAILDQVE IKLGLKEEKM RATRHVLSEY GNMSSACVLF ILDEMRRKSA KDGVATTGEG LEWGVLFGFG PGLTVETVVL HSVPL

Arabidopsis Description

CHSTT4 [Source:UniProtKB/TrEMBL;Acc:A0A178UKS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.