CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98485
KRH46374

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34850.1	KRG98485	AT1G62940.1	23632852
AT4G34850.1	KRH46374	AT1G62940.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24136	Soybean	cytosol	87.34	89.66
PGSC0003DMT400004133	Potato	cytosol	82.43	83.95
Solyc01g111070.2.1	Tomato	cytosol	81.4	82.25
VIT_03s0038g01460.t01	Wine grape	cytosol	82.43	81.38
Bra011566.1-P	Field mustard	cytosol	81.91	80.87
CDX75466	Canola	cytosol	81.91	80.87
AT4G34850.1	Thale cress	cytosol	81.91	80.87
CDX69091	Canola	cytosol	81.65	80.61
CDY40656	Canola	cytosol	81.14	80.1
CDY34811	Canola	cytosol	81.14	80.1
Bra034658.1-P	Field mustard	cytosol	80.88	79.85
Bra017681.1-P	Field mustard	cytosol	80.88	79.85
CDY17490	Canola	cytosol	80.62	79.59
CDX72506	Canola	cytosol	80.36	79.34
CDY58814	Canola	cytosol	80.1	79.08
Os07t0411300-00	Rice	cytosol	71.58	68.4
EER98407	Sorghum	cytosol	71.83	66.51
Zm00001d019478_P001	Maize	cytosol	70.54	65.47
TraesCS5A01G002900.1	Wheat	cytosol	71.06	65.17
TraesCS5B01G003100.1	Wheat	cytosol	70.54	65.16
TraesCS5D01G003600.1	Wheat	cytosol	70.8	65.08
KRH75257	Soybean	cytosol	64.86	64.69
HORVU5Hr1G000690.2	Barley	cytosol, peroxisome	71.06	60.18
KRH42776	Soybean	cytosol	29.46	44.71
KRH37579	Soybean	cytosol	42.12	42.01
KRH75544	Soybean	cytosol	42.12	42.01
KRH71115	Soybean	cytosol	42.12	42.01
KRH77699	Soybean	endoplasmic reticulum	42.12	41.9
KRH27737	Soybean	cytosol	41.86	41.65
KRH42757	Soybean	cytosol	41.34	41.24
KRH58872	Soybean	cytosol	41.34	41.24
KRH42783	Soybean	cytosol	41.34	41.24
KRH42780	Soybean	cytosol	41.34	41.24
KRH42778	Soybean	cytosol	41.34	41.24
KRH42775	Soybean	cytosol	41.34	41.24
KRH42759	Soybean	cytosol	41.34	41.24
KRH42758	Soybean	cytosol	41.34	41.24
KRH42760	Soybean	cytosol	41.09	40.98
KRG94730	Soybean	cytosol	41.09	40.66
KRH18039	Soybean	cytosol	29.46	35.85
GSMUA_Achr5P17860_001	Banana	cytosol, nucleus, peroxisome	68.99	35.51

Protein Annotations

EntrezGene:100776160	MapMan:21.8.1.4	Gene3D:3.40.47.10	EMBL:ACUP02006781	InterPro:Chalcone/stilbene_synth_C	InterPro:Chalcone/stilbene_synthase_N
EnsemblPlantsGene:GLYMA_11G097900	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	UniProt:I1LIQ0	InterPro:IPR016039	EnsemblPlants:KRH29108
ProteinID:KRH29108	ProteinID:KRH29108.1	PFAM:PF00195	PFAM:PF02797	PIRSF:PIRSF000451	PANTHER:PTHR11877
PANTHER:PTHR11877:SF31	InterPro:Polyketide_synthase_type-III	SUPFAM:SSF53901	InterPro:Thiolase-like	UniParc:UPI000233C828	:

Description

hypothetical protein

Coordinates

chr11:+:7456118..7457703

Molecular Weight (calculated)

42323.2 Da

IEP (calculated)

4.991

GRAVY (calculated)

-0.065

Length

387 amino acids

Sequence
(BLAST)

001: MGNEGIMNGV TPGKATILAL GKAFPHQLVM QEYLVDGYFR DTNCDSPELK QKLTRLCKTT TVKTRYVVMS EEILKKYPEL AAEGIPTVKQ RLEICNEAVT
101: EMAIEASQAC INNWGGSLSD ITHLVYVSSS EARLPGGDLY LAKGLGLSPD TQRVMLYFAG CSGGVAGLRV AKDIAENNPG SRVLIATSET TIIGFKPPSA
201: DRPYDLVGVA LFGDGAGAMI IGSDPILESE KPLFELHTAV QEFLPHTEKK IDGRLTEEGI SFKLARELPQ IIEDNVEGFC DKLISVVGFE NKEYNKMFWA
301: VHPGGPAILN RIEKRLDLLP EKLSASRRAL MDYGNASSNT IVYVLEYMIE EGLKIRKDAR GDLEWGLILA FGPGITFEGI LARNLCA

Best Arabidopsis Sequence Match ( AT4G34850.1 )
(BLAST)

001: MGSIDAAVLG SEKKSNPGKA TILALGKAFP HQLVMQEYLV DGYFKTTKCD DPELKQKLTR LCKTTTVKTR YVVMSEEILK KYPELAIEGG STVTQRLDIC
101: NDAVTEMAVE ASRACIKNWG RSISDITHVV YVSSSEARLP GGDLYLAKGL GLSPDTHRVL LYFVGCSGGV AGLRVAKDIA ENNPGSRVLL ATSETTIIGF
201: KPPSVDRPYD LVGVALFGDG AGAMIIGSDP DPICEKPLFE LHTAIQNFLP ETEKTIDGRL TEQGINFKLS RELPQIIEDN VENFCKKLIG KAGLAHKNYN
301: QMFWAVHPGG PAILNRIEKR LNLSPEKLSP SRRALMDYGN ASSNSIVYVL EYMLEESKKV RNMNEEENEW GLILAFGPGV TFEGIIARNL DV

Arabidopsis Description

PKSBPSKB [Source:UniProtKB/TrEMBL;Acc:A0A178UTW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.