CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24136	endoplasmic reticulum
KRH26218
KRH29108	endoplasmic reticulum
KRH75257	endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	KRH26218	AT1G01280.1	23632852
AT1G62940.1	KRH75257	AT1G02050.1	23632852
AT1G62940.1	KRH75257	AT1G02050.1	23632852
AT1G62940.1	KRH24136	AT4G34850.1	23632852
AT1G62940.1	KRH29108	AT4G34850.1	23632852
AT1G62940.1	KRH24136	AT4G34850.1	23632852
AT1G62940.1	KRH29108	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46374	Soybean	peroxisome	96.38	96.38
VIT_01s0010g03720.t01	Wine grape	peroxisome	75.41	75.14
Solyc02g088710.2.1	Tomato	peroxisome	71.79	71.79
AT1G62940.1	Thale cress	peroxisome	69.8	71.22
CDY39816	Canola	peroxisome	69.08	70.74
GSMUA_Achr6P36020_001	Banana	peroxisome	60.22	67.27
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	54.25	66.52
Os04t0310800-01	Rice	peroxisome	62.21	61.98
EER99996	Sorghum	plastid	63.29	57.85
Zm00001d003702_P001	Maize	plastid	63.47	57.54
TraesCS2B01G291100.1	Wheat	plastid	64.01	57.19
TraesCS2A01G272900.1	Wheat	plastid	64.01	57.1
TraesCS2D01G272200.1	Wheat	plastid	63.65	56.87
KRH25085	Soybean	peroxisome	24.23	43.93
KXG26308	Sorghum	peroxisome	41.05	41.65
KRH63132	Soybean	vacuole	20.98	40.7
KRG92118	Soybean	peroxisome	11.39	39.38
KRH02885	Soybean	peroxisome	36.53	37.69
KRH09616	Soybean	mitochondrion, peroxisome	36.17	37.17
KRH23700	Soybean	peroxisome	36.35	36.75
KRH02884	Soybean	peroxisome	35.99	36.38
KRH02886	Soybean	peroxisome, plastid	37.07	36.35
KRH22842	Soybean	peroxisome, plastid	35.44	36.3
KRH77759	Soybean	peroxisome	36.17	36.04
KRH30593	Soybean	peroxisome	36.17	35.84
KRH29003	Soybean	plastid	35.44	34.75
KRG92119	Soybean	peroxisome	35.62	34.62
KRH34673	Soybean	peroxisome	35.62	34.56
Zm00001d039274_P003	Maize	peroxisome	62.75	34.42
KRH17509	Soybean	peroxisome, plastid	34.0	34.24
KRH34672	Soybean	peroxisome	35.26	34.21
KRH19011	Soybean	peroxisome	34.54	33.99
KRH27719	Soybean	peroxisome	33.09	33.95
KRH57646	Soybean	peroxisome, plastid	33.45	33.51
KRG94318	Soybean	peroxisome, plastid	32.73	33.46
KRH74284	Soybean	peroxisome	32.91	32.91
KRH63739	Soybean	peroxisome, plastid	32.55	31.03
KRH54211	Soybean	peroxisome	32.19	29.82
KRH39635	Soybean	cytosol, golgi, peroxisome	25.68	28.51
Bra036646.1-P	Field mustard	peroxisome	69.62	26.03
CDY03253	Canola	peroxisome	69.44	24.89
KRH57649	Soybean	plastid	12.3	24.29
KRG94321	Soybean	cytosol, golgi, peroxisome	12.66	22.22

Protein Annotations

EntrezGene:100811418	MapMan:21.8.1.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	EMBL:ACUP02010892	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:GLYMA_18G076900	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	UniProt:I1N0A3	EnsemblPlants:KRG98485	ProteinID:KRG98485	ProteinID:KRG98485.1	PFAM:PF00501
PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096	PANTHER:PTHR24096:SF312	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI000233ECDB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:7297071..7301111

Molecular Weight (calculated)

60346.2 Da

IEP (calculated)

5.756

GRAVY (calculated)

0.048

Length

553 amino acids

Sequence
(BLAST)

001: MGTYVENFAS EEEHVFRSQH SPVPVPDNVT LPEFVLQNAE LYADKVAFVD AVTGKGVTFS EVVTGVHRFS KALRTLGLRK GHVVIVVLPN VVEYAIVALG
101: IMAAGGVFSG ANPTSHVSEI KKQAESADAK LIVTNVTNYE KVKALELPII LLGDEVVEGA MNWNKLLEAA DRAGDDLTKE PIQQNDLCAM PFSSGTTGMS
201: KGVMLTHRNL VANLCSTLFG VTKEMEGLVT TLGLIPFFHI YGITGICCAT LKSKGKVVVM GRFELKTFLN ALITHEVTFA PIVPPIILTL VKNPIVDEFD
301: LSKLKLQAIM TAAAPLAPEL LNAFEHKFPG VAVQEAYGLT EHSCITLTYA QKGLGSTHRN SVGFILPNLE VKFVDPDTGR SLPRNTPGEL CVRSQCVMQG
401: YYKQEDETAQ TIDKNGWLHT GDIGFIDDEE NVFIIDRIKE LIKYKGFQVA PAELEAILLS HSSVEDAAVV PLPDEEAGEI PAASVVLSPG EKESEEDIMN
501: YVASNAAHYK KVRVVHFVEA IPKSPSGKIM RRLVKERMVE KMKTESLTKS KNI

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.