CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24136	endoplasmic reticulum
KRH26218
KRH29108	endoplasmic reticulum
KRH75257	endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	KRH26218	AT1G01280.1	23632852
AT1G62940.1	KRH75257	AT1G02050.1	23632852
AT1G62940.1	KRH75257	AT1G02050.1	23632852
AT1G62940.1	KRH24136	AT4G34850.1	23632852
AT1G62940.1	KRH29108	AT4G34850.1	23632852
AT1G62940.1	KRH24136	AT4G34850.1	23632852
AT1G62940.1	KRH29108	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98485	Soybean	peroxisome	96.38	96.38
VIT_01s0010g03720.t01	Wine grape	peroxisome	75.95	75.68
Solyc02g088710.2.1	Tomato	peroxisome	72.51	72.51
AT1G62940.1	Thale cress	peroxisome	70.89	72.32
CDY39816	Canola	peroxisome	70.16	71.85
GSMUA_Achr6P36020_001	Banana	peroxisome	61.12	68.28
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	54.43	66.74
Os04t0310800-01	Rice	peroxisome	62.39	62.16
EER99996	Sorghum	plastid	63.65	58.18
Zm00001d003702_P001	Maize	plastid	63.83	57.87
TraesCS2B01G291100.1	Wheat	plastid	63.83	57.03
TraesCS2A01G272900.1	Wheat	plastid	63.83	56.94
TraesCS2D01G272200.1	Wheat	plastid	63.47	56.7
KRH25085	Soybean	peroxisome	24.05	43.61
KXG26308	Sorghum	peroxisome	40.87	41.47
KRH63132	Soybean	vacuole	21.16	41.05
KRG92118	Soybean	peroxisome	11.57	40.0
KRH02885	Soybean	peroxisome	35.99	37.13
KRH09616	Soybean	mitochondrion, peroxisome	35.8	36.8
KRH23700	Soybean	peroxisome	35.99	36.38
KRH22842	Soybean	peroxisome, plastid	35.26	36.11
KRH02886	Soybean	peroxisome, plastid	36.71	35.99
KRH02884	Soybean	peroxisome	35.44	35.83
KRH77759	Soybean	peroxisome	35.8	35.68
KRH30593	Soybean	peroxisome	35.8	35.48
KRH34673	Soybean	peroxisome	35.8	34.74
Zm00001d039274_P003	Maize	peroxisome	63.11	34.62
KRG92119	Soybean	peroxisome	35.62	34.62
KRH34672	Soybean	peroxisome	35.44	34.39
KRH29003	Soybean	plastid	34.72	34.04
KRH17509	Soybean	peroxisome, plastid	33.45	33.7
KRH19011	Soybean	peroxisome	34.18	33.63
KRH27719	Soybean	peroxisome	32.73	33.58
KRG94318	Soybean	peroxisome, plastid	32.55	33.27
KRH74284	Soybean	peroxisome	32.91	32.91
KRH57646	Soybean	peroxisome, plastid	32.73	32.79
KRH63739	Soybean	peroxisome, plastid	32.19	30.69
KRH54211	Soybean	peroxisome	31.83	29.48
KRH39635	Soybean	cytosol, golgi, peroxisome	25.68	28.51
Bra036646.1-P	Field mustard	peroxisome	70.71	26.44
CDY03253	Canola	peroxisome	70.52	25.28
KRH57649	Soybean	plastid	12.12	23.93
KRG94321	Soybean	cytosol, golgi, peroxisome	12.12	21.27

Protein Annotations

EntrezGene:100814237	MapMan:21.8.1.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	EMBL:ACUP02005341	InterPro:AMP-bd_C
InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:GLYMA_08G329700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	UniProt:K7LAC1	EnsemblPlants:KRH46374
ProteinID:KRH46374	ProteinID:KRH46374.1	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096
PANTHER:PTHR24096:SF312	SUPFAM:SSF56801	TMHMM:TMhelix	UniParc:UPI0002338E1C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:44747015..44751073

Molecular Weight (calculated)

60353.3 Da

IEP (calculated)

6.117

GRAVY (calculated)

0.053

Length

553 amino acids

Sequence
(BLAST)

001: MGTYVENFAS EEEHVFRSQY SSVPVPDNVT LPEFVLQNAE LYADKVAFVD AVTGKGVTFS EVVRGVHRFS KALRSLGLRK GLVVIVVLPN VVEYAIVALG
101: IMAAGGVFSG ANPTSHVSEI KKQAESADAK LIVTNVTNYE KVKALELPII VLGDEVVEGA MNWNKLLEAA DRAGDDLARE PIQQNDLCAM PFSSGTTGMS
201: KGVMLTHRNL VANLCSTLFG VTKEMEGQVT TLGLIPFFHI YGITGICCAT LKSKGKVVVM GRFELKTFLN ALITHEVTFA PIVPPIILTL VKNPIVDEFD
301: LRKLKLQAIM TAAAPLAPEL LNAFEHKFPG VAVQEAYGLT EHSCITLTYV QKGLGSTNKN SVGFILPNLE VKFVDPDTGR SLPRNTPGEL CVRSQCVMQG
401: YYKQEDETAQ TIDKNGWLHT GDIGFIDDEE NVFIVDRIKE LIKYKGFQVA PAELEAILLS HSSVEDAAVV PLPDEETGEI PAASVILSPG AKESEEDIMN
501: YVASNAAHYK KVRVVHFVDA IPKSPSGKIM RRLVKEKMVE KMKTKSLTKS KNI

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.