CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91459	endoplasmic reticulum
EER98407	endoplasmic reticulum
EES14499

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	EES14499	AT1G01280.1	23632852
AT1G62940.1	EER91459	AT1G02050.1	23632852
AT1G62940.1	EER91459	AT1G02050.1	23632852
AT1G62940.1	EER98407	AT4G34850.1	23632852
AT1G62940.1	EER98407	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0310800-01	Rice	peroxisome	58.53	57.48
Zm00001d003702_P001	Maize	plastid	63.49	56.72
EER99996	Sorghum	plastid	59.63	53.72
TraesCS2B01G291100.1	Wheat	plastid	59.45	52.34
TraesCS2A01G272900.1	Wheat	plastid	59.45	52.26
TraesCS2D01G272200.1	Wheat	plastid	59.27	52.18
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	42.39	51.22
GSMUA_Achr6P36020_001	Banana	peroxisome	39.08	43.03
VIT_01s0010g03720.t01	Wine grape	peroxisome	43.3	42.52
Solyc02g088710.2.1	Tomato	peroxisome	41.83	41.23
KRG98485	Soybean	peroxisome	41.65	41.05
KRH46374	Soybean	peroxisome	41.47	40.87
CDY39816	Canola	peroxisome	38.9	39.26
AT1G62940.1	Thale cress	peroxisome	38.53	38.75
OQU91476	Sorghum	peroxisome	24.04	23.52
KXG40154	Sorghum	peroxisome	23.49	23.15
EES13602	Sorghum	peroxisome	24.22	23.12
EES04623	Sorghum	peroxisome	23.49	23.06
EES05680	Sorghum	peroxisome	23.49	22.61
EES01913	Sorghum	peroxisome, plastid	22.94	22.52
EES15085	Sorghum	peroxisome	22.57	22.28
EER95569	Sorghum	peroxisome	22.57	22.24
EER98656	Sorghum	peroxisome, plastid	22.39	21.98
KXG38810	Sorghum	peroxisome	22.57	21.47
EER90150	Sorghum	peroxisome	21.65	21.18
EER97853	Sorghum	peroxisome, plastid	21.47	21.16
KXG38162	Sorghum	peroxisome	20.37	19.72
OQU88316	Sorghum	peroxisome, plastid	20.92	19.06
Bra036646.1-P	Field mustard	peroxisome	39.27	14.47
CDY03253	Canola	peroxisome	39.63	14.0

Protein Annotations

EnsemblPlants:KXG26308	EnsemblPlantsGene:SORBI_3006G079500	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	ncoils:Coil	PANTHER:PTHR24096	PANTHER:PTHR24096:SF312
PFAM:PF00501	ProteinID:KXG26308	ProteinID:KXG26308.1	ProteinID:OQU81579.1	ScanProsite:PS00455	SEG:seg
SUPFAM:SSF56801	UniParc:UPI00081AC30C	UniProt:A0A1B6PKW0	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr6:+:44605029..44607365

Molecular Weight (calculated)

58288.2 Da

IEP (calculated)

11.207

GRAVY (calculated)

-0.281

Length

545 amino acids

Sequence
(BLAST)

001: MGDAAIAVVH QTEEEQEEHI FRSRFPPVDL PDVTVPEFVL AGAEAYADKV ALVEAAPGGR SYTYGEVAQD VARFARALRS IGIRKGHVVV VALPNLAVYP
101: VVSLGIMSAG AVFSGVNPRA IAAEIKKQVE DSEAKLVVAN EVAYDKVKDA GVPVIGIGDD MERFPGAISW DELLAAADRT GAPVVALEPV QQSDLCALPY
201: SSGTTGVSKG VMLSHRNLVS NLCSSMFAVG EELVGQVVTL GLMPFFHIYG ITGICCSTLR HKGTVVVMDR FDLRTFLGAL VTHRVRFAPI VPPVMLAMVK
301: SSVADEFDLS DLALRSVMTA ARAGPPRGVR EEVPRRAGGG GVRAHGAQLH HADARRRRRP AAGAGPDRQE ELGRVHPAQP GGEVRRPRHG PVAAQEHGRG
401: DLRPEPGRDA GLLQEEGGDG AHHRRQGLAP HRRRRLHRRR RRRVRRRPDQ GAHQVQGLPG CSCRAGGHSP VPPVGRRRGR LRPAGRGGRR GPGVVRGAAA
501: WLVGERGRHH GVRGRSRGVV QEAPAAAVRG RHPQVGVRQD PAAAA

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.