CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91459	endoplasmic reticulum
EER98407	endoplasmic reticulum
EES14499

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62940.1	EES14499	AT1G01280.1	23632852
AT1G62940.1	EER91459	AT1G02050.1	23632852
AT1G62940.1	EER91459	AT1G02050.1	23632852
AT1G62940.1	EER98407	AT4G34850.1	23632852
AT1G62940.1	EER98407	AT4G34850.1	23632852

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G066630.1	Barley	cytosol, mitochondrion, peroxisome, plastid	64.63	86.7
Os04t0310800-01	Rice	peroxisome	77.36	84.32
TraesCS2D01G272200.1	Wheat	plastid	81.82	79.97
TraesCS2B01G291100.1	Wheat	plastid	81.82	79.97
TraesCS2A01G272900.1	Wheat	plastid	81.82	79.84
GSMUA_Achr6P36020_001	Banana	peroxisome	58.68	71.72
VIT_01s0010g03720.t01	Wine grape	peroxisome	60.66	66.13
CDY39816	Canola	peroxisome	58.18	65.19
AT1G62940.1	Thale cress	peroxisome	58.35	65.13
Solyc02g088710.2.1	Tomato	peroxisome	59.34	64.92
KRH46374	Soybean	peroxisome	58.18	63.65
KRG98485	Soybean	peroxisome	57.85	63.29
KXG26308	Sorghum	peroxisome	53.72	59.63
Zm00001d039274_P003	Maize	peroxisome	91.07	54.66
EES04623	Sorghum	peroxisome	35.04	38.2
KXG40154	Sorghum	peroxisome	34.88	38.16
EES15085	Sorghum	peroxisome	34.71	38.04
OQU91476	Sorghum	peroxisome	34.71	37.7
EES13602	Sorghum	peroxisome	35.37	37.48
EER90150	Sorghum	peroxisome	34.38	37.34
EER95569	Sorghum	peroxisome	34.05	37.25
EES05680	Sorghum	peroxisome	34.05	36.4
EES01913	Sorghum	peroxisome, plastid	33.22	36.22
EER98656	Sorghum	peroxisome, plastid	33.22	36.22
EER97853	Sorghum	peroxisome, plastid	31.74	34.72
KXG38810	Sorghum	peroxisome	32.07	33.86
KXG38162	Sorghum	peroxisome	29.42	31.62
OQU88316	Sorghum	peroxisome, plastid	31.24	31.61
Bra036646.1-P	Field mustard	peroxisome	60.5	24.75
CDY03253	Canola	peroxisome	60.99	23.91

Protein Annotations

MapMan:21.8.1.2	Gene3D:3.30.300.30	Gene3D:3.40.50.12780	EntrezGene:8077554	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	UniProt:C5XJK6	EnsemblPlants:EER99996	ProteinID:EER99996	ProteinID:EER99996.2	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455
PANTHER:PTHR24096	PANTHER:PTHR24096:SF312	EnsemblPlantsGene:SORBI_3003G004900	SUPFAM:SSF56801	UniParc:UPI0009DC904C	RefSeq:XP_002454877.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:449995..452112

Molecular Weight (calculated)

64755.2 Da

IEP (calculated)

5.940

GRAVY (calculated)

0.077

Length

605 amino acids

Sequence
(BLAST)

001: MASPSSRGHS LPMPRPLVIS SNANAAPFLL LPTNNQQQQQ QLRRMGDAAI ATVHLHDAEE EQEQEHIFRS RFPPVAVPDD VTVPEFVLAG AEAYADKTAL
101: VEAAPGGQSY TYGEVVRDVA RFARALRSVG IRKGHVVVVA LPNLAVYPVV SLGIMSAGAV FSGVNPRAVA GEIKKQVEDS EARLVVADAV AYDKVKDAGV
201: PVIGIGDAAR LPGAISWDEL LAAADRTGAP AVALDPAQQS DLCALPYSSG TTGVSKGVML SHRNLVSSLC SSMFAVGPEM VGQVVTLGLM PFFHIYGITG
301: ICCATLRHKG TVVVMDRFDL RGFLGALLTH KVMFAPVVPP IMLAMVKSPV ADEFDLSGLA LRSVMTAAAP LAPELLAAFE RKFPGVQVEE AYGLTEHSCI
401: TLTHAGGDDP QQGPVQIAKK KSVGFILPNL EVKFVDPDTG RSLPKNTPGE ICVRSQAVMQ GYYRRKEETE STIDAAGWLH TGDVGYIDDD GDVFIVDRIK
501: ELIKYKGFQV APAELEAILL SHPSVEDAAV FGLPDEEAGE VPASCVVRRR GAPESEADMM AYVAERVASY KKLRLLRFVD AIPKSVSGKI LRRQLRDDFI
601: KTAAA

Best Arabidopsis Sequence Match ( AT1G62940.1 )
(BLAST)

001: MESQKQEDNE YIFRSLYPSV PIPDKLTLPE FVLQGVEEYT ENVAFVEAVT GKAVTYGDVV RDTKRLAKAL TSLGLRKGQV MVVVLPNVAE YGIIALGIMS
101: AGGVFSGANP TALVSEIKKQ VEASGARGII TDATNYEKVK SLGLPVIVLG EEKIEGAVNW KDLLEAGDKC GDTDNEEILQ TDLCALPFSS GTTGLQKGVM
201: LTHRNLIANL CSTLFGVRSE MIGQIVTLGL IPFFHIYGIV GICCATMKNK GKVVAMSRYD LRIFLNALIA HEVSFAPIVP PIILNLVKNP IVDEFDLSKL
301: KLQSVMTAAA PLAPELLTAF EAKFPNVQVQ EAYGLTEHSC ITLTHGDPEK GQGIAKRNSV GFILPNLEVK FIDPDTGRSL PKNTSGELCV RSQCVMQGYF
401: MNKEETDKTI DEQGWLHTGD IGYIDDDGDI FIVDRIKELI KYKGFQVAPA ELEAILLTHP SVEDVAVVPL PDEEAGEIPA ACVVINPKAT EKEEDILNFV
501: AANVAHYKKV RAVHFVDSIP KSLSGKIMRR LLRDKILSIN KK

Arabidopsis Description

4CLL14-coumarate--CoA ligase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ12]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.