CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

nucleus 1
plastid 3
peroxisome 4
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018660_P001	Maize	peroxisome	77.93	82.77
EER97853	Sorghum	peroxisome, plastid	75.75	81.92
TraesCS4D01G074500.1	Wheat	plastid	64.72	71.27
TraesCS4A01G239100.2	Wheat	plastid	63.88	70.35
TraesCS4B01G075900.1	Wheat	plastid	63.04	69.43
HORVU4Hr1G012630.3	Barley	peroxisome	62.88	65.51
CDY45731	Canola	peroxisome	15.55	60.39
CDY45730	Canola	vacuole	39.97	52.07
CDY71478	Canola	vacuole	39.63	51.63
EER98656	Sorghum	peroxisome, plastid	46.82	50.45
VIT_01s0010g02740.t01	Wine grape	peroxisome, plastid	45.99	50.0
Bra029229.1-P	Field mustard	peroxisome	46.49	49.73
VIT_14s0171g00300.t01	Wine grape	peroxisome	44.48	48.99
EES01913	Sorghum	peroxisome, plastid	45.15	48.65
AT5G63380.1	Thale cress	peroxisome	44.65	47.51
KXG38162	Sorghum	peroxisome	44.65	47.42
PGSC0003DMT400039281	Potato	peroxisome	43.31	46.92
VIT_17s0000g01790.t01	Wine grape	peroxisome, plastid	43.14	46.91
KRG94318	Soybean	peroxisome, plastid	42.31	46.77
VIT_14s0171g00290.t01	Wine grape	peroxisome	42.14	46.58
Solyc03g111170.2.1	Tomato	nucleus	42.81	46.38
KRH57646	Soybean	peroxisome, plastid	42.31	45.83
KRH63739	Soybean	peroxisome, plastid	43.98	45.34
KRH54211	Soybean	peroxisome	43.65	43.72
EER95569	Sorghum	peroxisome	39.97	43.22
OQU91476	Sorghum	peroxisome	37.29	40.04
KXG38810	Sorghum	peroxisome	37.63	39.27
KXG40154	Sorghum	peroxisome	33.78	36.53
EER90150	Sorghum	peroxisome	32.44	34.83
EES04623	Sorghum	peroxisome	32.11	34.59
EES15085	Sorghum	peroxisome	31.61	34.24
KRG94321	Soybean	cytosol, golgi, peroxisome	17.89	33.97
EES05680	Sorghum	peroxisome	31.27	33.04
EES13602	Sorghum	peroxisome	31.27	32.75
KRH57649	Soybean	plastid	15.05	32.14
EER99996	Sorghum	plastid	31.61	31.24
KXG26308	Sorghum	peroxisome	19.06	20.92

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:35.1	UniProt:A0A1W0W1Q8	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlants:OQU88316
ProteinID:OQU88316	ProteinID:OQU88316.1	PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	PANTHER:PTHR24096
PANTHER:PTHR24096:SF298	EnsemblPlantsGene:SORBI_3002G009700	SUPFAM:SSF56801	UniParc:UPI0001A8365F	RefSeq:XP_002461333.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:884835..887715

Molecular Weight (calculated)

63629.0 Da

IEP (calculated)

8.458

GRAVY (calculated)

0.225

Length

598 amino acids

Sequence
(BLAST)

001: MPPPSASDTV IDPRSGYCAS TKTFHSLRTP EPPLPSPDLP LSFPAFALSF LPSPLPAAPS RPALVDAGTG ESVPFGTFLS RLRALAAALR SRLRLAPGDV
101: AFVLAPAGVH VPVLYYALMS VGAVVSPANP SLTAAEVSRL LALSNPSVAF AVSGTRGKLP PGLRTVLLDS PTFLSFLMHD EPEDGDAVVV VRQSDPAAVL
201: YSSGTTGRAK AVVLTHRNLI ASNATRAPVA GGTLMLAVPL FHIYGFAFCL RAASAAHTLL LHTARGRFDA AAVLAAMGRF GVTRLALAPP ALLAIVRAAE
301: EEADAGAAAA RVATLKAVNC GGAPVSADLI ARFSRMFPGV SVSQVGFARC CKFVSFDFLF RDYGTGCYKS LAISICKSYE LLFPIGKKGY GLTETTAGFC
401: RAVGEEESAR VGSVGRLSWG AEVKIVHPET RAALPPGVSG ELWVRGPFVM KGYLGEEDST SEIFDSEGWL RTGDLCYIDQ DGFVYIVDRL KELIKYKGYQ
501: VPPAELESLL QTHPDIVEAA VVPYPDDEAG ELPVAFVVRR PGSHLNESHI KEFVASQVVH YKRIHHVFLV DSIPKNAAGK ILRKDLAKLA LWRISSKL

Best Arabidopsis Sequence Match ( AT1G20480.1 )
(BLAST)

001: MAVKHGVDGD GSEIESRTLA VDRKSGFCES TSIFYSKREP MALPPNQFLD VTSFIASQPH RGKTVFVDAV TGRRLSFPEL WLGVERVAGC LYALGVRKGN
101: VVIILSPNSI LFPIVSLSVM SLGAIITTAN PINTSDEISK QIGDSRPVLA FTTCKLVSKL AAASNFNLPV VLMDDYHVPS QSYGDRVKLV GRLETMIETE
201: PSESRVKQRV NQDDTAALLY SSGTTGTSKG VMLSHRNLIA LVQAYRARFG LEQRTICTIP MCHIFGFGGF ATGLIALGWT IVVLPKFDMA KLLSAVETHR
301: SSYLSLVPPI VVAMVNGANE INSKYDLSSL HTVVAGGAPL SREVTEKFVE NYPKVKILQG YGLTESTAIA ASMFNKEETK RYGASGLLAP NVEGKIVDPD
401: TGRVLGVNQT GELWIRSPTV MKGYFKNKEA TASTIDSEGW LKTGDLCYID GDGFVFVVDR LKELIKCNGY QVAPAELEAL LLAHPEIADA AVIPIPDMKA
501: GQYPMAYIVR KVGSNLSESE IMGFVAKQVS PYKKIRKVTF LASIPKNPSG KILRRELTKL TTSKL

Arabidopsis Description

4CLL24-coumarate--CoA ligase-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84P25]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.