Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 3
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039281 | Potato | peroxisome | 96.01 | 96.01 |
| CDY45731 | Canola | peroxisome | 19.75 | 70.78 |
| VIT_17s0000g01790.t01 | Wine grape | peroxisome, plastid | 63.59 | 63.82 |
| CDY45730 | Canola | vacuole | 52.54 | 63.18 |
| CDY71478 | Canola | vacuole | 52.36 | 62.96 |
| KRH63739 | Soybean | peroxisome, plastid | 61.41 | 58.45 |
| Bra029229.1-P | Field mustard | peroxisome | 58.51 | 57.78 |
| AT5G63380.1 | Thale cress | peroxisome | 57.79 | 56.76 |
| KRH54211 | Soybean | peroxisome | 61.05 | 56.45 |
| GSMUA_Achr5P25570_001 | Banana | peroxisome | 56.16 | 56.16 |
| EES01913 | Sorghum | peroxisome, plastid | 53.99 | 53.69 |
| TraesCS3D01G388100.1 | Wheat | peroxisome | 54.35 | 53.38 |
| TraesCS3A01G394300.1 | Wheat | peroxisome | 53.99 | 53.21 |
| TraesCS3B01G426300.1 | Wheat | peroxisome | 54.17 | 53.2 |
| TraesCS3A01G394200.1 | Wheat | peroxisome, plastid | 53.08 | 52.51 |
| HORVU3Hr1G089000.2 | Barley | peroxisome, plastid | 54.35 | 51.19 |
| TraesCS4D01G074700.1 | Wheat | peroxisome | 50.18 | 50.73 |
| TraesCS3B01G426200.1 | Wheat | peroxisome, plastid | 51.45 | 50.71 |
| HORVU4Hr1G012660.1 | Barley | peroxisome | 49.64 | 50.65 |
| GSMUA_Achr1P13470_001 | Banana | peroxisome | 46.92 | 50.19 |
| TraesCS4B01G076100.1 | Wheat | peroxisome | 49.28 | 50.09 |
| TraesCS4A01G239000.1 | Wheat | peroxisome | 48.55 | 48.64 |
| Os01t0901600-01 | Rice | peroxisome, plastid | 52.36 | 48.33 |
| HORVU4Hr1G012680.8 | Barley | peroxisome | 48.73 | 48.29 |
| Os07t0280200-01 | Rice | peroxisome | 48.73 | 48.21 |
| TraesCS3B01G515400.1 | Wheat | peroxisome | 48.01 | 48.18 |
| TraesCS3A01G472200.1 | Wheat | peroxisome | 48.01 | 48.18 |
| TraesCS4D01G074600.1 | Wheat | peroxisome | 48.01 | 48.09 |
| TraesCS4B01G076000.1 | Wheat | peroxisome | 48.01 | 48.09 |
| Zm00001d012144_P001 | Maize | plastid | 35.69 | 48.05 |
| TraesCS4A01G239100.2 | Wheat | plastid | 47.1 | 47.88 |
| TraesCS5B01G570100.1 | Wheat | peroxisome | 47.83 | 47.65 |
| TraesCS4D01G074500.1 | Wheat | plastid | 46.74 | 47.51 |
| TraesCS3D01G468000.1 | Wheat | peroxisome | 47.46 | 47.29 |
| Os01t0901500-01 | Rice | plastid | 37.86 | 47.29 |
| EER98656 | Sorghum | peroxisome, plastid | 47.46 | 47.21 |
| TraesCS5D01G561500.1 | Wheat | peroxisome | 47.28 | 47.03 |
| EER97853 | Sorghum | peroxisome, plastid | 46.92 | 46.84 |
| TraesCS4B01G075900.1 | Wheat | plastid | 46.01 | 46.78 |
| Zm00001d019957_P002 | Maize | peroxisome | 47.64 | 46.22 |
| HORVU3Hr1G100420.4 | Barley | peroxisome, plastid | 48.55 | 46.21 |
| TraesCS3D01G388000.2 | Wheat | peroxisome, plastid | 49.82 | 46.14 |
| Zm00001d018660_P001 | Maize | peroxisome | 46.92 | 46.0 |
| Solyc12g094520.1.1 | Tomato | plastid | 45.11 | 45.19 |
| KXG38162 | Sorghum | peroxisome | 45.47 | 44.58 |
| HORVU4Hr1G012630.3 | Barley | peroxisome | 46.01 | 44.25 |
| TraesCS4A01G238800.1 | Wheat | plastid | 33.51 | 42.82 |
| OQU88316 | Sorghum | peroxisome, plastid | 46.38 | 42.81 |
| Solyc11g069050.1.1 | Tomato | peroxisome | 39.13 | 40.15 |
| Solyc11g007970.1.1 | Tomato | peroxisome | 40.76 | 39.82 |
| Solyc06g068650.2.1 | Tomato | peroxisome | 36.59 | 37.2 |
| Solyc03g117870.2.1 | Tomato | plastid | 36.59 | 37.06 |
| Solyc08g076300.2.1 | Tomato | peroxisome | 38.41 | 36.93 |
| Solyc12g042460.1.1 | Tomato | peroxisome | 35.33 | 35.58 |
| Solyc03g097030.2.1 | Tomato | peroxisome | 34.78 | 33.68 |
| Solyc07g008360.1.1 | Tomato | peroxisome | 34.6 | 33.63 |
| Solyc02g088710.2.1 | Tomato | peroxisome | 30.98 | 30.92 |
Protein Annotations
| Gene3D:3.30.300.30 | Gene3D:3.40.50.12780 | MapMan:35.1 | InterPro:AMP-bd_C | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004321 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005777 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009695 |
| GO:GO:0009987 | GO:GO:0016740 | UniProt:K4BJY0 | PFAM:PF00501 | PFAM:PF13193 | ScanProsite:PS00455 |
| PANTHER:PTHR24096 | PANTHER:PTHR24096:SF251 | SUPFAM:SSF56801 | EnsemblPlantsGene:Solyc03g111170.2 | EnsemblPlants:Solyc03g111170.2.1 | UniParc:UPI0002768D12 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:61817881..61823869
Molecular Weight (calculated)
59885.5 Da
IEP (calculated)
6.607
GRAVY (calculated)
0.092
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKNGYCGD TKIFKSLRPS VPLPPLTDPL SIVQYAFSLL NSPTTGINIS ATTFLIDADT GHCLSYADFL HQTQNLAASI QARYPSLSQN DVAFVLSPTS
101: IHVPVVFFAL LSLGVIVSPA NPLSSSSELT HMVQLCKPLI AFATSSTVGK LPSSLFPLGT VLLDSPEFRK MIQIPISNPI SYPIIHQSDS AAILYSSGTT
201: GKVKGVELTH RNLIALIASL FYSRFNDDAA NESEITEQAV AFMTLPLFHV FGFFMLIRLA SMGEAMVITA RFDFEKMLAA VEKYRVTYMP VSPPLVVAMA
301: KSDLALKYDL SSLQLLACGG APLGKEVAER FKSRFPNVEI LQGYGLTETT GGATGMNGPE ESNQYGSAGR LGVNVEAKIV DPESGKTLPP GQRGELWLRA
401: PTIMKGYVGD KQATSATLDP EGWLKTGDLC YFDADGFLYV VDRLKELIKY KAYQVPPAEL EHLLQSIPDV ADAAVIPYPD EEAGEIPMAY IVRRPGSTIS
501: ESQIIDIIAK QVSPYKKIRR VAFINAIPKS PAGKILRREL VNHATNGASA RL
101: IHVPVVFFAL LSLGVIVSPA NPLSSSSELT HMVQLCKPLI AFATSSTVGK LPSSLFPLGT VLLDSPEFRK MIQIPISNPI SYPIIHQSDS AAILYSSGTT
201: GKVKGVELTH RNLIALIASL FYSRFNDDAA NESEITEQAV AFMTLPLFHV FGFFMLIRLA SMGEAMVITA RFDFEKMLAA VEKYRVTYMP VSPPLVVAMA
301: KSDLALKYDL SSLQLLACGG APLGKEVAER FKSRFPNVEI LQGYGLTETT GGATGMNGPE ESNQYGSAGR LGVNVEAKIV DPESGKTLPP GQRGELWLRA
401: PTIMKGYVGD KQATSATLDP EGWLKTGDLC YFDADGFLYV VDRLKELIKY KAYQVPPAEL EHLLQSIPDV ADAAVIPYPD EEAGEIPMAY IVRRPGSTIS
501: ESQIIDIIAK QVSPYKKIRR VAFINAIPKS PAGKILRREL VNHATNGASA RL
001: MLTKTNDSRL IDRSSGFDQR TGIYHSLRPS LSLPPIDQPL SAAEFALSLL LKSSPPATAG KNIEALTYLV NSSSGDNLTY GELLRRVRSL AVSLRERFPS
101: LASRNVAFIL SPSSLDIPVL YLALMSIGVV VSPANPIGSE SEVSHQVEVS EPVIAFATSQ TVKKLQSSSL PLGTVLMDST EFLSWLNRSD SSSVNPFQVQ
201: VNQSDPAAIL FSSGTTGRVK GVLLTHRNLI ASTAVSHQRT LQDPVNYDRV GLFSLPLFHV FGFMMMIRAI SLGETLVLLG RFELEAMFKA VEKYKVTGMP
301: VSPPLIVALV KSELTKKYDL RSLRSLGCGG APLGKDIAER FKQKFPDVDI VQGYGLTESS GPAASTFGPE EMVKYGSVGR ISENMEAKIV DPSTGESLPP
401: GKTGELWLRG PVIMKGYVGN EKASAETVDK EGWLKTGDLC YFDSEDFLYI VDRLKELIKY KAYQVPPVEL EQILHSNPDV IDAAVVPFPD EDAGEIPMAF
501: IVRKPGSNLN EAQIIDFVAK QVTPYKKVRR VAFINAIPKN PAGKILRREL TKIAVDGNAS KL
101: LASRNVAFIL SPSSLDIPVL YLALMSIGVV VSPANPIGSE SEVSHQVEVS EPVIAFATSQ TVKKLQSSSL PLGTVLMDST EFLSWLNRSD SSSVNPFQVQ
201: VNQSDPAAIL FSSGTTGRVK GVLLTHRNLI ASTAVSHQRT LQDPVNYDRV GLFSLPLFHV FGFMMMIRAI SLGETLVLLG RFELEAMFKA VEKYKVTGMP
301: VSPPLIVALV KSELTKKYDL RSLRSLGCGG APLGKDIAER FKQKFPDVDI VQGYGLTESS GPAASTFGPE EMVKYGSVGR ISENMEAKIV DPSTGESLPP
401: GKTGELWLRG PVIMKGYVGN EKASAETVDK EGWLKTGDLC YFDSEDFLYI VDRLKELIKY KAYQVPPVEL EQILHSNPDV IDAAVVPFPD EDAGEIPMAF
501: IVRKPGSNLN EAQIIDFVAK QVTPYKKVRR VAFINAIPKN PAGKILRREL TKIAVDGNAS KL
Arabidopsis Description
4CLL94-coumarate--CoA ligase-like 9 [Source:UniProtKB/Swiss-Prot;Acc:Q84P23]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.